public void LoadTree(string fileName)
{
if (!File.Exists(fileName))
{
return;
}
try
{
Stream stream = File.Open(fileName, FileMode.Open);
//BinaryFormatter bFormatter = new BinaryFormatter();
// XmlSerializer ser = new XmlSerializer(typeof(SerializableDictionary<string, profileNode>));
XmlSerializer ser = new XmlSerializer(typeof(ProfileTree));
// SerializableDictionary<string, profileNode> localProfiles = (SerializableDictionary<string, profileNode>)ser.Deserialize(stream);
ProfileTree localProfiles = (ProfileTree)ser.Deserialize(stream);
this.masterNode = localProfiles.masterNode;
//this.masterNode = localProfiles;
this.combine = localProfiles.combine;
stream.Close();
}
catch (Exception)
{
}
}
public void GenerateAutomaticProfiles(string fileName)
{
ProfileTree t = ProfileAutomatic.AnalyseProfileFile(fileName, SIMDIST.DISTANCE);
string profileName = "automatic_distance.profile";
t.SaveProfiles(profileName);
hammingProfile = profileName;
}
public void GenerateAutomaticProfiles(string fileName)
{
ProfileTree t = ProfileAutomatic.AnalyseProfileFile(fileName, SIMDIST.SIMILARITY);
string profileName = "automatic_similarity.profile";
t.SaveProfiles(profileName);
this.profileName = profileName;
this.profileNameReg = profileName;
}
public void GenerateAutomaticProfiles(string fileName)
{
ProfileTree t = ProfileAutomatic.AnalyseProfileFile(fileName, SIMDIST.DISTANCE);
string profileName = "automatic_distance.profile";
t.SaveProfiles(profileName);
hammingProfile = profileName;
t = ProfileAutomatic.AnalyseProfileFile(fileName, SIMDIST.SIMILARITY);
profileName = "automatic_similarity.profile";
t.SaveProfiles(profileName);
jury1DProfile = profileName;
}
public void Prepare(List <KeyValuePair <string, string> > profilesStr, string profName, string profFile)
{
r = new ProfileTree();
r.LoadProfiles(profFile);
foreach (var item in profilesStr)
{
List <string> aux = new List <string>(item.Value.Length);
for (int i = 0; i < item.Value.Length; i++)
{
aux.Add(item.Value[i].ToString());
}
r.AddItemsCombineStates(item.Key, aux);
}
}
public Alignment()
{
r = new ProfileTree();
dirSettings.Load();
}