private void RunHashDendrogCombine(string name, string dirName, string alignmentFile = null, DCDFile dcd = null)
{
DateTime cpuPart1 = DateTime.Now;
HashClusterDendrog hk = null;
if (dcd != null)
{
hk = new HashClusterDendrog(dcd, opt.hash, opt.hierarchical);
}
else
if (alignmentFile != null)
{
hk = new HashClusterDendrog(null, alignmentFile, opt.hash, opt.hierarchical);
}
else
{
hk = new HashClusterDendrog(dirName, null, opt.hash, opt.hierarchical);
}
ClusterOutput output;
if (beginJob != null)
{
beginJob(currentProcessName, hk.ToString(), dirName, "NONE");
}
progressDic.Add(name, hk);
hk.InitHashCluster();
DateTime cpuPart2 = DateTime.Now;
output = hk.RunHashDendrogCombine();
UpdateOutput(name, dirName, alignmentFile, output, hk.UsedMeasure(), cpuPart1, cpuPart2, hk);
}
private void RunHashDendrogCombine(string name, string dirName, string alignmentFile = null, DCDFile dcd = null)
{
DateTime cpuPart1 = DateTime.Now;
HashClusterDendrog hk = null;
if (dcd != null)
hk = new HashClusterDendrog(dcd, opt.hierarchical.hash, opt.hierarchical.distance, opt.hierarchical.linkageType, opt.hierarchical.atoms, opt.hierarchical.reference1DjuryH,
opt.hierarchical.alignmentFileName, opt.hierarchical.hammingProfile, opt.hierarchical.jury1DProfileH);
else
if (alignmentFile != null)
hk = new HashClusterDendrog(null, alignmentFile, opt.hierarchical.hash, opt.hierarchical.distance, opt.hierarchical.linkageType, opt.hierarchical.atoms, opt.hierarchical.reference1DjuryH,
opt.hierarchical.alignmentFileName, opt.hierarchical.hammingProfile, opt.hierarchical.jury1DProfileH);
else
hk = new HashClusterDendrog(dirName, null, opt.hierarchical.hash, opt.hierarchical.distance, opt.hierarchical.linkageType, opt.hierarchical.atoms, opt.hierarchical.reference1DjuryH,
opt.hierarchical.alignmentFileName, opt.hierarchical.hammingProfile, opt.hierarchical.jury1DProfileH);
ClusterOutput output;
progressDic.Add(name, hk);
hk.InitHashCluster();
DateTime cpuPart2 = DateTime.Now;
output = hk.RunHashDendrogCombine();
UpdateOutput(name, dirName,alignmentFile, output, hk.UsedMeasure(), cpuPart1, cpuPart2, hk);
}