public override void AddInternalProfiles()
{
profileNode node = new profileNode();
node.profName = "SA CA";
node.internalName = "SA CA";
for (int i = 0; i < 10; i++)
{
node.AddStateItem(i.ToString(), i.ToString());
}
InternalProfilesManager.AddNodeToList(node, typeof(CAProfiles).FullName);
node = new profileNode();
node.profName = "SS CA";
node.internalName = "SS CA";
node.AddStateItem("H", "H");
node.AddStateItem("J", "J");
node.AddStateItem("K", "K");
node.AddStateItem("L", "L");
node.AddStateItem("E", "E");
node.AddStateItem("R", "R");
node.AddStateItem("T", "T");
node.AddStateItem("Y", "Y");
node.AddStateItem("U", "U");
node.AddStateItem("N", "N");
InternalProfilesManager.AddNodeToList(node, typeof(CAProfiles).FullName);
}
public override void AddInternalProfiles()
{
profileNode node = new profileNode();
node.profName = ProfileName;
node.internalName = ProfileName;
InternalProfilesManager.AddNodeToList(node, this.GetType().FullName);
}
public override void AddInternalProfiles()
{
profileNode node = new profileNode();
node.profName = ProfileName;
node.internalName = ProfileName;
InternalProfilesManager.AddNodeToList(node, typeof(UserDefinedProfile).FullName);
}
public override void AddInternalProfiles()
{
profileNode node = new profileNode();
node.profName = profileName;
node.internalName = profileName;
node.AddStateItem("0", "0");
node.AddStateItem("1", "1");
node.AddStateItem("2", "2");
node.AddStateItem("3", "3");
InternalProfilesManager.AddNodeToList(node, typeof(ContactMapProfileRNA).FullName);
}
public override void AddInternalProfiles()
{
profileNode node = new profileNode();
node.profName = profileName;
node.internalName = profileName;
for (int i = 0; i < 255; i++)
{
node.AddStateItem(i.ToString(), i.ToString(), true);
}
InternalProfilesManager.AddNodeToList(node, typeof(FragBagProfile).FullName);
}
public override void AddInternalProfiles()
{
profileNode node = new profileNode();
node.profName = "Contact";
node.internalName = "Contact";
for (int i = 0; i < 10; i++)
{
node.AddStateItem(i.ToString(), i.ToString());
}
//manager.AddNodeToList(node, "P");
node.AddStateItem("T", "T");
node.AddStateItem("C", "C");
node.AddStateItem("P", "P");
node.AddStateItem("H", "H");
node.AddStateItem("E", "E");
InternalProfilesManager.AddNodeToList(node, typeof(ContactProfile).FullName);
}
public override void AddInternalProfiles()
{
profileNode node = new profileNode();
node.profName = "RNA_SS";
node.internalName = "RNA_SS";
foreach (var item in SSList)
{
node.AddStateItem(item, item);
}
InternalProfilesManager.AddNodeToList(node, typeof(RNASSProfile).FullName);
node = new profileNode();
node.profName = "RNA_LW";
node.internalName = "RNA_LW";
foreach (var item in LWList)
{
node.AddStateItem(item, item);
}
InternalProfilesManager.AddNodeToList(node, typeof(RNASSProfile).FullName);
}
public override void AddInternalProfiles()
{
profileNode node = new profileNode();
node.profName = "SS";
node.internalName = "SS";
foreach (var item in SSList)
{
node.AddStateItem(item, item);
}
InternalProfilesManager.AddNodeToList(node, typeof(DsspInternalProfile).FullName);
node = new profileNode();
node.profName = "SA";
node.internalName = "SA";
for (int i = 0; i < 10; i++)
{
node.AddStateItem(i.ToString(), i.ToString());
}
InternalProfilesManager.AddNodeToList(node, typeof(DsspInternalProfile).FullName);
}
public override void RemoveInternalProfiles()
{
InternalProfilesManager.RemoveNodeFromList(ProfileName);
}
public void LoadProfiles()
{
InternalProfilesManager.LoadProfiles();
}
public void ClearProfiles()
{
InternalProfilesManager.ClearProfiles();
}
public override void RemoveInternalProfiles()
{
InternalProfilesManager.RemoveNodeFromList("RNA_SS");
InternalProfilesManager.RemoveNodeFromList("RNA_LW");
}
public override void RemoveInternalProfiles()
{
InternalProfilesManager.RemoveNodeFromList("SS CA");
InternalProfilesManager.RemoveNodeFromList("SA CA");
}
public override void RemoveInternalProfiles()
{
InternalProfilesManager.RemoveNodeFromList("Contact");
InternalProfilesManager.RemoveNodeFromList("SS Dihedral");
}
public override void RemoveInternalProfiles()
{
InternalProfilesManager.RemoveNodeFromList("ContactMap");
}
private void EditProfile(string Path, bool edit,profileType type)
{
ProfileDefinitionForm profDef = null ;
InternalProfileForm internalDef = null;
profileNode node = null;
profileNode newNode = null;
DialogResult res=DialogResult.Cancel;
if (edit)
{
node = treeProfiles.FindNode(Path);
if (node.internalName!=null)
{
internalDef = new InternalProfileForm(node,filter);
res = internalDef.ShowDialog();
if (res == DialogResult.OK)
{
newNode = internalDef.localNode;
toolSave.Enabled = true;
toolStripButton6.Enabled = true;
}
}
else
{
profDef = new ProfileDefinitionForm(node);
res = profDef.ShowDialog();
if (res == DialogResult.OK)
{
newNode = profDef.profile;
toolSave.Enabled = true;
toolStripButton6.Enabled = true;
}
}
}
else
{
if (Path == null)
Path = "Profiles";
if (type == profileType.EXTERNAL)
{
profDef = new ProfileDefinitionForm();
res = profDef.ShowDialog();
if (res == DialogResult.OK)
{
node = profDef.profile;
node.internalName = null;
toolSave.Enabled = true;
toolStripButton6.Enabled = true;
}
}
else
{
Settings set=new Settings();
set.Load();
InternalProfilesManager manager = new InternalProfilesManager();
List<profileNode> validProfiles = new List<profileNode>();
foreach (var item in InternalProfilesManager.internalList.Keys)
if (manager.CheckAccessibility(item, set.mode))
validProfiles.Add(item);
ListInternal intr = new ListInternal(validProfiles);
res = intr.ShowDialog();
if (res == DialogResult.OK)
{
InternalProfileForm intForm;
profileNode localNode = InternalProfilesManager.GetNode(intr.selectedProfile);
if(localNode.profName.Contains("Load"))
intForm = new InternalProfileForm(localNode,filter,false);
else
intForm = new InternalProfileForm(localNode,filter);
res = intForm.ShowDialog();
if (res == DialogResult.OK)
{
node = intForm.localNode;
node.profProgram = intr.selectedProfile;
newNode = node;
toolSave.Enabled = true;
toolStripButton6.Enabled = true;
}
}
}
}
if (res == DialogResult.OK)
{
if (node != null && File.Exists(node.OutFileName))
File.Delete(node.OutFileName);
//profChanged = true;
if (!edit)
{
//profChanged = true;
Regex exp = new Regex("^/");
TreeNode nodeT;//= new TreeNode(profDef.profile.profName);
string nPath = "";
if (Path != null)
nPath = exp.Replace(Path, "");
if (profilesView.SelectedNode == null)
{
nodeT = profilesView.Nodes[0].Nodes.Add(node.profName);
profilesView.Nodes[0].Expand();
}
else
{
nodeT = profilesView.SelectedNode.Nodes.Add(node.profName);
profilesView.SelectedNode.Expand();
}
nodeT.Tag = newNode;
Regex exp2 = new Regex("^Profiles");
Path = exp2.Replace(Path, "");
treeProfiles.AdddNode(Path, node);
}
else
{
profilesView.SelectedNode.Text = node.profName;
treeProfiles.RemoveNode(Path);
Regex exp2 = new Regex("^Profiles");
Path = exp2.Replace(Path, "");
treeProfiles.AdddNode(ParentPath(Path),newNode);
node.CopyNode(newNode);
ShowTree();
}
}
}
