public static PeptideAnalysisFrame ShowPeptideAnalysis(PeptideAnalysis peptideAnalysis)
{
if (peptideAnalysis == null)
{
return(null);
}
var form = Program.FindOpenEntityForm <PeptideAnalysisFrame>(peptideAnalysis);
if (form != null)
{
form.Activate();
return(form);
}
using (peptideAnalysis.IncChromatogramRefCount())
{
TopographForm.Instance.LoadPeptideAnalysis(peptideAnalysis.Id);
if (!peptideAnalysis.ChromatogramsWereLoaded)
{
return(null);
}
form = new PeptideAnalysisFrame(peptideAnalysis);
form.Show(TopographForm.Instance.DocumentPanel, DockState.Document);
return(form);
}
}
public static PeptideFileAnalysisFrame ShowFileAnalysisForm <T>(PeptideFileAnalysis peptideFileAnalysis) where T : PeptideFileAnalysisForm
{
var analysisForm = PeptideAnalysisFrame.ShowPeptideAnalysis(peptideFileAnalysis.PeptideAnalysis);
if (null == analysisForm)
{
return(null);
}
return(ActivatePeptideDataForm <T>(analysisForm.PeptideAnalysisSummary, peptideFileAnalysis));
}
private void ShowPeptideAnalysis(Peptide peptide)
{
using (var session = Workspace.OpenSession())
{
var dbPeptide = session.Load <DbPeptide>(peptide.Id);
var dbPeptideAnalysis = (DbPeptideAnalysis)session
.CreateCriteria(typeof(DbPeptideAnalysis))
.Add(Restrictions.Eq("Peptide", dbPeptide))
.UniqueResult();
if (dbPeptideAnalysis == null)
{
var psmTimesByDataFileId = dbPeptide.PsmTimesByDataFileId(session);
if (psmTimesByDataFileId.Count == 0)
{
MessageBox.Show(
"This peptide cannot be analyzed because it has no search results.",
Program.AppName);
return;
}
if (MessageBox.Show("This peptide has not yet been analyzed. Do you want to analyze it now?", Program.AppName, MessageBoxButtons.OKCancel) == DialogResult.Cancel)
{
return;
}
session.BeginTransaction();
session.Save(dbPeptideAnalysis = Peptide.CreateDbPeptideAnalysis(session, dbPeptide));
foreach (var grouping in psmTimesByDataFileId)
{
MsDataFile msDataFile;
if (!Workspace.MsDataFiles.TryGetValue(grouping.Key, out msDataFile))
{
continue;
}
session.Save(PeptideFileAnalysis.CreatePeptideFileAnalysis(
session, msDataFile, dbPeptideAnalysis, psmTimesByDataFileId));
dbPeptideAnalysis.FileAnalysisCount++;
}
session.Update(dbPeptideAnalysis);
session.Transaction.Commit();
}
var peptideAnalysis = TopographForm.Instance.LoadPeptideAnalysis(dbPeptideAnalysis.GetId());
if (peptideAnalysis == null)
{
return;
}
PeptideAnalysisFrame.ShowPeptideAnalysis(peptideAnalysis);
}
}
private void dataGridView1_CellContentClick(object sender, DataGridViewCellEventArgs e)
{
if (e.RowIndex < 0)
{
return;
}
var row = dataGridView1.Rows[e.RowIndex];
if (e.ColumnIndex == colPeptide.Index)
{
var peptideSequence = row.Cells[e.ColumnIndex].Value as string;
if (string.IsNullOrEmpty(peptideSequence))
{
return;
}
using (var session = Workspace.OpenSession())
{
var peptideAnalysisIds =
session.CreateQuery(
"SELECT pa.Id FROM DbPeptideAnalysis pa WHERE pa.Peptide.Sequence = :sequence")
.SetParameter("sequence", Peptide.TrimSequence(peptideSequence))
.List();
if (peptideAnalysisIds.Count >= 0)
{
PeptideAnalysisFrame.ShowPeptideAnalysis(
TurnoverForm.Instance.LoadPeptideAnalysis((long)peptideAnalysisIds[0]));
}
}
return;
}
if (e.ColumnIndex == colProteinKey.Index)
{
var halfLifeForm = new HalfLifeForm(Workspace)
{
Peptide = Peptide.TrimSequence(Convert.ToString(row.Cells[colPeptide.Index].Value) ?? ""),
ProteinName = Convert.ToString(row.Cells[colProteinName.Index].Value),
MinScore = double.Parse(tbxMinScore.Text),
};
halfLifeForm.Show(DockPanel, DockState);
}
}
private void PeptideClickHandler(object sender, EventArgs eventArgs)
{
var peptide = _halfLifeResultRow.Peptide;
if (peptide == null)
{
return;
}
DbPeptideAnalysis dbPeptideAnalysis;
using (var session = _form.Workspace.OpenSession())
{
dbPeptideAnalysis = (DbPeptideAnalysis)session.CreateCriteria(typeof(DbPeptideAnalysis))
.Add(Restrictions.Eq("Peptide", session.Load <DbPeptide>(peptide.Id)))
.UniqueResult();
if (dbPeptideAnalysis == null)
{
return;
}
PeptideAnalysis peptideAnalysis;
if (!_form.Workspace.PeptideAnalyses.TryGetValue(dbPeptideAnalysis.Id.GetValueOrDefault(), out peptideAnalysis))
{
return;
}
var form = Program.FindOpenEntityForm <PeptideAnalysisFrame>(peptideAnalysis);
if (form != null)
{
form.Activate();
return;
}
using (peptideAnalysis.IncChromatogramRefCount())
{
TopographForm.Instance.LoadPeptideAnalysis(dbPeptideAnalysis.Id.GetValueOrDefault());
form = new PeptideAnalysisFrame(peptideAnalysis);
form.Show(_form.DockPanel, _form.DockState);
}
}
}
private void PeptideClickHandler(object sender, EventArgs eventArgs)
{
var peptide = _halfLifeResultRow.Peptide;
if (peptide == null)
{
return;
}
DbPeptideAnalysis dbPeptideAnalysis;
using (var session = _form.Workspace.OpenSession())
{
dbPeptideAnalysis = (DbPeptideAnalysis) session.CreateCriteria(typeof (DbPeptideAnalysis))
.Add(Restrictions.Eq("Peptide", session.Load<DbPeptide>(peptide.Id)))
.UniqueResult();
if (dbPeptideAnalysis == null)
{
return;
}
PeptideAnalysis peptideAnalysis;
if (!_form.Workspace.PeptideAnalyses.TryGetValue(dbPeptideAnalysis.Id.GetValueOrDefault(), out peptideAnalysis))
{
return;
}
var form = Program.FindOpenEntityForm<PeptideAnalysisFrame>(peptideAnalysis);
if (form != null)
{
form.Activate();
return;
}
using (peptideAnalysis.IncChromatogramRefCount())
{
TopographForm.Instance.LoadPeptideAnalysis(dbPeptideAnalysis.Id.GetValueOrDefault());
form = new PeptideAnalysisFrame(peptideAnalysis);
form.Show(_form.DockPanel, _form.DockState);
}
}
}
public static PeptideAnalysisFrame ShowPeptideAnalysis(PeptideAnalysis peptideAnalysis)
{
if (peptideAnalysis == null)
{
return null;
}
var form = Program.FindOpenEntityForm<PeptideAnalysisFrame>(peptideAnalysis);
if (form != null)
{
form.Activate();
return form;
}
using (peptideAnalysis.IncChromatogramRefCount())
{
TopographForm.Instance.LoadPeptideAnalysis(peptideAnalysis.Id);
if (!peptideAnalysis.ChromatogramsWereLoaded)
{
return null;
}
form = new PeptideAnalysisFrame(peptideAnalysis);
form.Show(TopographForm.Instance.DocumentPanel, DockState.Document);
return form;
}
}
