public DocumentSettingsDlg(IDocumentUIContainer documentContainer)
{
InitializeComponent();
Icon = Resources.Skyline;
DocumentContainer = documentContainer;
_annotationsListBoxDriver = new SettingsListBoxDriver <AnnotationDef>(
checkedListBoxAnnotations, Settings.Default.AnnotationDefList);
_annotationsListBoxDriver.LoadList(
DocumentContainer.Document.Settings.DataSettings.AnnotationDefs);
_groupComparisonsListBoxDriver = new SettingsListBoxDriver <GroupComparisonDef>(
checkedListBoxGroupComparisons, Settings.Default.GroupComparisonDefList);
_groupComparisonsListBoxDriver.LoadList(
DocumentContainer.Document.Settings.DataSettings.GroupComparisonDefs);
var listDataList = new ListDefList();
listDataList.AddRange(Settings.Default.ListDefList);
listDataList.AddRange(documentContainer.Document.Settings.DataSettings.Lists);
_listsListBoxDriver = new SettingsListBoxDriver <ListData>(
checkedListBoxLists, listDataList);
_listsListBoxDriver.LoadList(documentContainer.Document.Settings.DataSettings.Lists);
var dataSchema = new SkylineDataSchema(documentContainer, DataSchemaLocalizer.INVARIANT);
chooseViewsControl.ViewContext = new SkylineViewContext(dataSchema, new RowSourceInfo[0]);
chooseViewsControl.ShowCheckboxes = true;
chooseViewsControl.CheckedViews =
documentContainer.Document.Settings.DataSettings.ViewSpecList.ViewSpecs.Select(
viewSpec => PersistedViews.MainGroup.Id.ViewName(viewSpec.Name));
}
private void btnAddAnnotation_Click(object sender, System.EventArgs e)
{
using (var editDlg = new DefineAnnotationDlg(Settings.Default.AnnotationDefList))
{
if (editDlg.ShowDialog(this) == DialogResult.OK)
{
var chosen = _annotationsListBoxDriver.Chosen.ToList();
var annotationDef = editDlg.GetAnnotationDef();
chosen.Add(annotationDef);
Settings.Default.AnnotationDefList.Add(annotationDef);
_annotationsListBoxDriver.LoadList(chosen);
}
}
}
public void AddList()
{
using (var editDlg = new ListDesigner(ListData.EMPTY, _listsListBoxDriver.List))
{
if (editDlg.ShowDialog(this) == DialogResult.OK)
{
var chosen = _listsListBoxDriver.Chosen.ToList();
var listDef = editDlg.GetListDef();
chosen.Add(listDef);
_listsListBoxDriver.List.Add(editDlg.GetListDef());
_listsListBoxDriver.LoadList(chosen);
}
}
}
public void AddAnnotation()
{
using (var editDlg = new DefineAnnotationDlg(Settings.Default.AnnotationDefList))
{
if (editDlg.ShowDialog(this) == DialogResult.OK)
{
var chosen = _annotationsListBoxDriver.Chosen.ToList();
var annotationDef = editDlg.GetAnnotationDef();
chosen.Add(annotationDef);
Settings.Default.AnnotationDefList.Add(annotationDef);
_annotationsListBoxDriver.LoadList(chosen);
}
}
}
public void AddMetadataRule()
{
using (var editDlg = new MetadataRuleSetEditor(DocumentContainer, new MetadataRuleSet(typeof(ResultFile)),
Settings.Default.MetadataRuleSets))
{
if (editDlg.ShowDialog(this) == DialogResult.OK)
{
var chosen = _metadataRuleSetsListBoxDriver.Chosen.ToList();
Settings.Default.MetadataRuleSets.Add(editDlg.MetadataRuleSet);
chosen.Add(editDlg.MetadataRuleSet);
_metadataRuleSetsListBoxDriver.LoadList(chosen);
}
}
}
public void AddGroupComparison()
{
using (var editDlg = new EditGroupComparisonDlg(
DocumentContainer,
GroupComparisonDef.EMPTY,
Settings.Default.GroupComparisonDefList))
{
if (editDlg.ShowDialog(this) == DialogResult.OK)
{
var chosen = _groupComparisonsListBoxDriver.Chosen.ToList();
Settings.Default.GroupComparisonDefList.Add(editDlg.GroupComparisonDef);
chosen.Add(editDlg.GroupComparisonDef);
_groupComparisonsListBoxDriver.LoadList(chosen);
}
}
}
public TransitionSettingsUI(SkylineWindow parent)
{
InitializeComponent();
// Populate the fragment finder combo boxes
foreach (string item in TransitionFilter.GetStartFragmentFinderLabels())
{
comboRangeFrom.Items.Add(item);
}
foreach (string item in TransitionFilter.GetEndFragmentFinderLabels())
{
comboRangeTo.Items.Add(item);
}
_parent = parent;
_transitionSettings = _parent.DocumentUI.Settings.TransitionSettings;
// Initialize prediction settings
comboPrecursorMass.SelectedItem = Prediction.PrecursorMassType.GetLocalizedString();
comboIonMass.SelectedItem = Prediction.FragmentMassType.GetLocalizedString();
_driverCE = new SettingsListComboDriver <CollisionEnergyRegression>(comboCollisionEnergy,
Settings.Default.CollisionEnergyList);
string sel = (Prediction.CollisionEnergy == null ? null : Prediction.CollisionEnergy.Name);
_driverCE.LoadList(sel);
_driverDP = new SettingsListComboDriver <DeclusteringPotentialRegression>(comboDeclusterPotential,
Settings.Default.DeclusterPotentialList);
sel = (Prediction.DeclusteringPotential == null ? null : Prediction.DeclusteringPotential.Name);
_driverDP.LoadList(sel);
_driverCoV = new SettingsListComboDriver <CompensationVoltageParameters>(comboCompensationVoltage,
Settings.Default.CompensationVoltageList);
_driverCoV.LoadList(Prediction.CompensationVoltage == null ? null : Prediction.CompensationVoltage.Name);
_driverOptimizationLibrary = new SettingsListComboDriver <OptimizationLibrary>(comboOptimizationLibrary,
Settings.Default.OptimizationLibraryList);
_driverOptimizationLibrary.LoadList(Prediction.OptimizedLibrary == null ? null : Prediction.OptimizedLibrary.Name);
if (Prediction.OptimizedMethodType == OptimizedMethodType.None)
{
comboOptimizeType.SelectedIndex = 0;
}
else
{
cbUseOptimized.Checked = true;
comboOptimizeType.SelectedItem = Prediction.OptimizedMethodType.GetLocalizedString();
}
// Initialize filter settings
textPrecursorCharges.Text = Filter.PrecursorCharges.ToArray().ToString(", "); // Not L10N? Internationalization of comma?
textIonCharges.Text = Filter.ProductCharges.ToArray().ToString(", "); // Not L10N? Internationalization of comma?
textIonTypes.Text = TransitionFilter.ToStringIonTypes(Filter.IonTypes, true);
comboRangeFrom.SelectedItem = Filter.FragmentRangeFirst.Label;
comboRangeTo.SelectedItem = Filter.FragmentRangeLast.Label;
textExclusionWindow.Text = Filter.PrecursorMzWindow != 0
? Filter.PrecursorMzWindow.ToString(LocalizationHelper.CurrentCulture)
: string.Empty;
cbExclusionUseDIAWindow.Checked = Filter.ExclusionUseDIAWindow;
cbAutoSelect.Checked = Filter.AutoSelect;
_driverIons = new MeasuredIonListBoxDriver(listAlwaysAdd, Settings.Default.MeasuredIonList);
_driverIons.LoadList(Filter.MeasuredIons);
// Initialize library settings
cbLibraryPick.Checked = (Libraries.Pick != TransitionLibraryPick.none);
panelPick.Visible = cbLibraryPick.Checked;
textTolerance.Text = Libraries.IonMatchTolerance.ToString(LocalizationHelper.CurrentCulture);
textIonCount.Text = Libraries.IonCount.ToString(LocalizationHelper.CurrentCulture);
if (Libraries.Pick == TransitionLibraryPick.filter)
{
radioFiltered.Checked = true;
}
else if (Libraries.Pick == TransitionLibraryPick.all_plus)
{
radioAllAndFiltered.Checked = true;
}
// Initialize instrument settings
textMinMz.Text = Instrument.MinMz.ToString(LocalizationHelper.CurrentCulture);
textMaxMz.Text = Instrument.MaxMz.ToString(LocalizationHelper.CurrentCulture);
cbDynamicMinimum.Checked = Instrument.IsDynamicMin;
textMzMatchTolerance.Text = Instrument.MzMatchTolerance.ToString(LocalizationHelper.CurrentCulture);
if (Instrument.MaxTransitions.HasValue)
{
textMaxTrans.Text = Instrument.MaxTransitions.Value.ToString(LocalizationHelper.CurrentCulture);
}
if (Instrument.MaxInclusions.HasValue)
{
textMaxInclusions.Text = Instrument.MaxInclusions.Value.ToString(LocalizationHelper.CurrentCulture);
}
if (Instrument.MinTime.HasValue)
{
textMinTime.Text = Instrument.MinTime.Value.ToString(LocalizationHelper.CurrentCulture);
}
if (Instrument.MaxTime.HasValue)
{
textMaxTime.Text = Instrument.MaxTime.Value.ToString(LocalizationHelper.CurrentCulture);
}
// Initialize full-scan settings
FullScanSettingsControl = new FullScanSettingsControl(_parent)
{
Anchor = (AnchorStyles.Top | AnchorStyles.Left),
Location = new Point(0, 0),
Size = new Size(363, 491)
};
FullScanSettingsControl.IsolationSchemeChangedEvent += IsolationSchemeChanged;
tabFullScan.Controls.Add(FullScanSettingsControl);
// VISUAL:
// - Store the distance between the cbExclusionDIAWindow and the lower end of the box (to use as margin later)
// - Shift the cbExclusionDIAWindow down (it is only higher in the designer for better manipulation)
_lower_margin = groupBox1.Height - textExclusionWindow.Location.Y - textExclusionWindow.Height;
int pixelShift = cbExclusionUseDIAWindow.Location.Y - lbPrecursorMzWindow.Location.Y;
cbExclusionUseDIAWindow.Location = new Point(cbExclusionUseDIAWindow.Location.X, cbExclusionUseDIAWindow.Location.Y - pixelShift);
DoIsolationSchemeChanged();
}