private TransitionDocNode CreateTransitionNode(IonType type, int cleavageOffset, int charge, double massH,
TransitionLosses losses, IDictionary <double, LibraryRankedSpectrumInfo.RankedMI> transitionRanks, CustomIon customIon = null)
{
Transition transition = new Transition(this, type, cleavageOffset, 0, charge, null, customIon);
var info = TransitionDocNode.GetLibInfo(transition, Transition.CalcMass(massH, losses), transitionRanks);
return(new TransitionDocNode(transition, losses, massH, null, info));
}
private TransitionDocNode CreateTransitionNode(int massIndex, double precursorMassH, TransitionIsotopeDistInfo isotopeDistInfo,
TransitionLosses losses, IDictionary <double, LibraryRankedSpectrumInfo.RankedMI> transitionRanks, CustomIon customIon = null)
{
Transition transition = new Transition(this, massIndex, customIon);
var info = isotopeDistInfo == null?TransitionDocNode.GetLibInfo(transition, Transition.CalcMass(precursorMassH, losses), transitionRanks) : null;
return(new TransitionDocNode(transition, losses, precursorMassH, isotopeDistInfo, info));
}