public override bool GetChromatogram(int id, Target modifiedSequence, Color color, out ChromExtra extra, out TimeIntensities timeIntensities)
{
// No mass errors in SRM
if (_readChromatograms == 0)
{
_readStartTime = DateTime.UtcNow; // Said to be 117x faster than Now and this is for a delta
}
float[] times, intensities;
if (!_globalChromatogramExtractor.GetChromatogram(id, out times, out intensities))
{
_dataFile.GetChromatogram(id, out string chromId, out times, out intensities);
}
timeIntensities = new TimeIntensities(times, intensities, null, null);
// Assume that each chromatogram will be read once, though this may
// not always be completely true.
_readChromatograms++;
if (!System.Diagnostics.Debugger.IsAttached)
{
double predictedMinutes = ExpectedReadDurationMinutes;
if (_readMaxMinutes > 0 && predictedMinutes > _readMaxMinutes)
{
// TODO: This warning isn't checked in the command line version of Skyline. Maybe we should do that.
if (Status is ChromatogramLoadingStatus)
{
Status =
((ChromatogramLoadingStatus)Status).ChangeWarningMessage(Resources.ChromatogramDataProvider_GetChromatogram_This_import_appears_to_be_taking_longer_than_expected__If_importing_from_a_network_drive__consider_canceling_this_import__copying_to_local_disk_and_retrying_);
}
}
}
if (_readChromatograms < _chromIds.Count)
{
SetPercentComplete(50 + _readChromatograms * 50 / _chromIds.Count);
}
int index = _chromIndices[id];
extra = new ChromExtra(index, -1); // TODO: is zero the right value?
// Display in AllChromatogramsGraph
var loadingStatus = Status as ChromatogramLoadingStatus;
if (loadingStatus != null)
{
loadingStatus.Transitions.AddTransition(
modifiedSequence,
color,
index, -1,
times,
intensities);
}
return(true);
}
public override bool GetChromatogram(int id, Target modifiedSequence, Color color, out ChromExtra extra, out TimeIntensities timeIntensities)
{
float[] times, intensities;
if (!_globalChromatogramExtractor.GetChromatogram(id, out times, out intensities))
{
_dataFile.GetChromatogram(id, out _, out times, out intensities);
}
timeIntensities = new TimeIntensities(times, intensities, null, null);
// Assume that each chromatogram will be read once, though this may
// not always be completely true.
_readChromatograms++;
if (_readChromatograms < _chromIds.Count)
{
SetPercentComplete(50 + _readChromatograms * 50 / _chromIds.Count);
}
int index = _chromIndices[id];
extra = new ChromExtra(index, -1); // TODO: is zero the right value?
// Display in AllChromatogramsGraph
var loadingStatus = Status as ChromatogramLoadingStatus;
if (loadingStatus != null)
{
loadingStatus.Transitions.AddTransition(
modifiedSequence,
color,
index, -1,
times,
intensities);
}
return(true);
}
