public bool SetLibrary(string name, string path, bool append = true)
{
if (string.IsNullOrWhiteSpace(path))
{
_out.WriteLine(Resources.CommandLine_SetLibrary_Error__Cannot_set_library_name_without_path_);
return false;
}
else if (!File.Exists(path))
{
_out.WriteLine(Resources.CommandLine_SetLibrary_Error__The_file__0__does_not_exist_, path);
return false;
}
else if (path.EndsWith(BiblioSpecLiteSpec.EXT_REDUNDANT))
{
_out.WriteLine(Resources.CommandLine_SetLibrary_Error__The_file__0__appears_to_be_a_redundant_library_);
return false;
}
if (string.IsNullOrWhiteSpace(name))
name = Path.GetFileNameWithoutExtension(path);
LibrarySpec librarySpec;
string ext = Path.GetExtension(path);
if (Equals(ext, BiblioSpecLiteSpec.EXT))
librarySpec = new BiblioSpecLiteSpec(name, path);
else if (Equals(ext, BiblioSpecLibSpec.EXT))
librarySpec = new BiblioSpecLibSpec(name, path);
else if (Equals(ext, XHunterLibSpec.EXT))
librarySpec = new XHunterLibSpec(name, path);
else if (Equals(ext, NistLibSpec.EXT))
librarySpec = new NistLibSpec(name, path);
else if (Equals(ext, SpectrastSpec.EXT))
librarySpec = new SpectrastSpec(name, path);
else
{
_out.WriteLine(Resources.CommandLine_SetLibrary_Error__The_file__0__is_not_a_supported_spectral_library_file_format_, path);
return false;
}
// Check for conflicting names
foreach (var docLibrarySpec in _doc.Settings.PeptideSettings.Libraries.LibrarySpecs)
{
if (docLibrarySpec.Name == librarySpec.Name || docLibrarySpec.FilePath == librarySpec.FilePath)
{
_out.WriteLine(Resources.CommandLine_SetLibrary_Error__The_library_you_are_trying_to_add_conflicts_with_a_library_already_in_the_file_);
return false;
}
}
var librarySpecs = append ?
new List<LibrarySpec>(_doc.Settings.PeptideSettings.Libraries.LibrarySpecs) { librarySpec } :
new List<LibrarySpec>{ librarySpec };
SrmSettings newSettings = _doc.Settings.ChangePeptideLibraries(l => l.ChangeLibrarySpecs(librarySpecs));
_doc = _doc.ChangeSettings(newSettings);
return true;
}
public bool Equals(SpectrastSpec other)
{
return(base.Equals(other));
}
public bool Equals(SpectrastSpec other)
{
return base.Equals(other);
}