public void ForceWorkflow(ImportPeptideSearchDlg.Workflow workflowType)
{
WorkflowType = workflowType;
grpWorkflow.Hide();
int offset = grpWorkflow.Height + (cbFilterForDocumentPeptides.Top - listSearchFiles.Bottom);
listSearchFiles.Height += offset;
cbFilterForDocumentPeptides.Top += offset;
cbIncludeAmbiguousMatches.Top += offset;
}
public void ShowImportPeptideSearchDlg(ImportPeptideSearchDlg.Workflow? workflowType)
{
if (!CheckDocumentExists(Resources.SkylineWindow_ShowImportPeptideSearchDlg_You_must_save_this_document_before_importing_a_peptide_search_))
{
return;
}
using (var dlg = !workflowType.HasValue
? new ImportPeptideSearchDlg(this, _libraryManager)
: new ImportPeptideSearchDlg(this, _libraryManager, workflowType.Value))
{
if (dlg.ShowDialog(this) == DialogResult.OK)
{
// Nothing to do; the dialog does all the work.
}
}
}
public void ModifyOptionsForImportPeptideSearchWizard(ImportPeptideSearchDlg.Workflow workflow)
{
// Reduce MS1 filtering groupbox
int precursorChargesShift = groupBoxMS2.Top - groupBoxMS1.Bottom;
labelEnrichments.Hide();
comboEnrichments.Hide();
groupBoxMS1.Height = textPrecursorIsotopeFilter.Bottom + groupBoxMS1.Height - comboEnrichments.Bottom;
if (workflow == ImportPeptideSearchDlg.Workflow.dda)
{
// Set up precursor charges input
textPrecursorCharges.Text = SkylineWindow.Document.Settings.TransitionSettings.Filter.PrecursorCharges.ToArray().ToString(", "); // Not L10N
int precursorChargesTopDifference = lblPrecursorCharges.Top - groupBoxMS1.Top;
lblPrecursorCharges.Top = groupBoxMS1.Top;
textPrecursorCharges.Top -= precursorChargesTopDifference;
textPrecursorCharges.Show();
lblPrecursorCharges.Show();
// Reposition MS1 filtering groupbox
groupBoxMS1.Top = textPrecursorCharges.Bottom + precursorChargesShift;
}
int newRadioTimeAroundTop = radioUseSchedulingWindow.Top;
int radioTimeAroundTopDifference = radioKeepAllTime.Top - newRadioTimeAroundTop;
radioUseSchedulingWindow.Hide();
flowLayoutPanelUseSchedulingWindow.Hide();
radioKeepAllTime.Top = newRadioTimeAroundTop;
groupBoxRetentionTimeToKeep.Height -= radioTimeAroundTopDifference;
// Select defaults
PrecursorIsotopesCurrent = FullScanPrecursorIsotopes.Count;
radioTimeAroundMs2Ids.Checked = true;
int nextGroupBoxTop = groupBoxMS1.Bottom + precursorChargesShift;
if (workflow != ImportPeptideSearchDlg.Workflow.dda)
{
groupBoxMS2.Top = nextGroupBoxTop;
groupBoxRetentionTimeToKeep.Top = groupBoxMS2.Bottom + precursorChargesShift;
AcquisitionMethod = (workflow == ImportPeptideSearchDlg.Workflow.dia)
? FullScanAcquisitionMethod.DIA
: FullScanAcquisitionMethod.Targeted;
ProductMassAnalyzer = PrecursorMassAnalyzer;
if (workflow == ImportPeptideSearchDlg.Workflow.dia && Settings.Default.IsolationSchemeList.Count > 1)
{
comboIsolationScheme.SelectedIndex = 1;
}
}
else
{
// Hide MS/MS filtering groupbox entirely.
groupBoxMS2.Hide();
// Reduce and reposition Retention time filtering groupbox.
groupBoxRetentionTimeToKeep.Top = nextGroupBoxTop;
}
}
public void Initialize(ImportPeptideSearchDlg.Workflow workflow)
{
if (workflow != ImportPeptideSearchDlg.Workflow.dia)
{
int offset = lblTolerance.Top - cbExclusionUseDIAWindow.Top;
Array.ForEach(new Control[] {lblTolerance, txtTolerance, lblToleranceUnits, lblIonCount, txtIonCount, lblIonCountUnits}, c => c.Top -= offset);
cbExclusionUseDIAWindow.Hide();
}
}
