public override void UpdateGraph(bool selectionChanged) { if (!GraphSummary.DocumentUIContainer.DocumentUI.Settings.HasResults) { _areaCVGraphData = null; return; } var settings = new AreaCVGraphData.AreaCVGraphSettings(GraphSummary.Type); _document = GraphSummary.DocumentUIContainer.DocumentUI; _percentage = !Settings.Default.AreaCVShowDecimals; _decimals = _percentage ? 1 : 3; CurveList.Clear(); var gotData = _cache.TryGet(_document, settings, DataCallback, out _areaCVGraphData); if (!gotData) { Title.Text = Resources.AreaCVHistogram2DGraphPane_UpdateGraph_Calculating____; return; } if (!_areaCVGraphData.IsValid) { Title.Text = Resources.AreaCVHistogram2DGraphPane_Draw_Not_enough_data; return; } var factor = AreaGraphController.GetAreaCVFactorToDecimal(); Title.Text = string.Empty; YAxis.Title.Text = Resources.AreaCVHistogram2DGraphPane_UpdateGraph_CV + (_percentage ? @" (%)" : string.Empty); XAxis.Title.Text = Resources.AreaCvHistogram2DGraphPane_UpdateGraph_Log10_Mean_Area; XAxis.Scale.MinAuto = XAxis.Scale.MinAuto = XAxis.Scale.MaxAuto = YAxis.Scale.MaxAuto = false; XAxis.Scale.Min = Math.Max(0, double.IsNaN(Settings.Default.AreaCVMinLog10Area) ? _areaCVGraphData.MinMeanArea : Settings.Default.AreaCVMinLog10Area); XAxis.Scale.Max = double.IsNaN(Settings.Default.AreaCVMaxLog10Area) ? _areaCVGraphData.MaxMeanArea : Settings.Default.AreaCVMaxLog10Area; YAxis.Scale.Min = 0.0; YAxis.Scale.Max = double.IsNaN(Settings.Default.AreaCVMaxCV) ? _areaCVGraphData.MaxCV * factor : Settings.Default.AreaCVMaxCV; AxisChange(); var points = _areaCVGraphData.Data .Select(d => new HeatMapData.TaggedPoint3D(new Point3D(d.MeanArea, d.CV * factor, d.Frequency), d)) .ToList(); Items = points.Count; // Because heatmaps can't be trusted to have a consistent number of points on all monitors var heatMapData = new HeatMapData(points); HeatMapGraphPane.GraphHeatMap(this, heatMapData, 17, 2, (float)(_areaCVGraphData.MinCV * factor), (float)(_areaCVGraphData.MaxCV * factor), Settings.Default.AreaCVLogScale, 0); var unit = _percentage ? @"%" : string.Empty; if (Settings.Default.AreaCVShowMedianCV) { string text = string.Format(Resources.AreaCVHistogram2DGraphPane_UpdateGraph_Median___0_, HistogramHelper.FormatDouble(_areaCVGraphData.MedianCV * factor, _decimals) + unit); _lineItems[0] = AddLineItem(text, XAxis.Scale.Min, XAxis.Scale.Max, _areaCVGraphData.MedianCV * factor, _areaCVGraphData.MedianCV * factor, Color.Blue); CurveList.Insert(0, _lineItems[0]); } if (Settings.Default.AreaCVShowCVCutoff) { string text = string.Format(Resources.AreaCVHistogramGraphPane_UpdateGraph_Below__0____1_, Settings.Default.AreaCVCVCutoff + unit, HistogramHelper.FormatDouble(_areaCVGraphData.BelowCVCutoff * factor, _decimals) + unit); _lineItems[1] = AddLineItem(text, XAxis.Scale.Min, XAxis.Scale.Max, Settings.Default.AreaCVCVCutoff, Settings.Default.AreaCVCVCutoff, Color.Red); CurveList.Insert(0, _lineItems[1]); } }
public override void UpdateGraph(bool selectionChanged) { if (!GraphSummary.DocumentUIContainer.DocumentUI.Settings.HasResults) { _areaCVGraphData = null; return; } var settings = new AreaCVGraphData.AreaCVGraphSettings(GraphSummary.Type); _document = GraphSummary.DocumentUIContainer.DocumentUI; var factor = AreaGraphController.GetAreaCVFactorToDecimal(); BarSettings.Type = BarType.SortedOverlay; BarSettings.ClusterScaleWidth = Settings.Default.AreaCVHistogramBinWidth; BarSettings.MinClusterGap = 0.0f; _percentage = !Settings.Default.AreaCVShowDecimals; _decimals = _percentage ? 1 : 3; GraphObjList.Clear(); CurveList.Clear(); _stickItems.Clear(); var gotData = _cache.TryGet(_document, settings, DataCallback, out _areaCVGraphData); if (!gotData || !_areaCVGraphData.IsValid) { return; } var fontHeight = GraphSummary.CreateFontSpec(Color.Black).GetHeight(CalcScaleFactor()); var height = PaneHeightToYValue(fontHeight); var heightFactor = 1; if (Settings.Default.AreaCVShowMedianCV) { var stick = AddStickItem(_areaCVGraphData.MedianCV * factor, _areaCVGraphData.MedianCV * factor, 0.0, _areaCVGraphData.MaxFrequency + heightFactor++ *height, Color.Blue); CurveList.Add(stick); _stickItems.Add(stick); } if (Settings.Default.AreaCVShowCVCutoff) { var stick = AddStickItem(Settings.Default.AreaCVCVCutoff, Settings.Default.AreaCVCVCutoff, 0.0, _areaCVGraphData.MaxFrequency + heightFactor++ *height, Color.Red); CurveList.Add(stick); _stickItems.Add(stick); } var selected = HistogramHelper.GetSelectedPeptides(GraphSummary).NodePeps.OrderBy(p => p.Id.GlobalIndex).ToList(); var comparer = Comparer <PeptideDocNode> .Create((a, b) => a.Id.GlobalIndex.CompareTo(b.Id.GlobalIndex)); var selectedPoints = new PointPairList(); var selectedPoints2 = new PointPairList(); var otherPoints = new PointPairList(); foreach (var d in _areaCVGraphData.Data) { int frequency; var x = d.CV * factor + Settings.Default.AreaCVHistogramBinWidth / 2.0f; var pt = new PointPair(x, d.Frequency) { Tag = d }; if (Settings.Default.ShowReplicateSelection && (frequency = d.PeptideAnnotationPairs.Count(pair => selected.BinarySearch(pair.Peptide, comparer) >= 0)) > 0) { selectedPoints.Add(pt); selectedPoints2.Add(new PointPair(x, frequency) { Tag = d }); } else { otherPoints.Add(pt); } } CurveList.Insert(0, MakeBarItem(selectedPoints2, Color.Red)); CurveList.Insert(1, MakeBarItem(selectedPoints, Color.FromArgb(Color.Red.ToArgb() & 0x7FFFFFFF))); CurveList.Insert(2, MakeBarItem(otherPoints, Color.FromArgb(180, 220, 255))); XAxis.Title.Text = Resources.AreaCVHistogramGraphPane_UpdateGraph_CV + (_percentage ? @" (%)" : string.Empty); YAxis.Title.Text = Resources.AreaCVHistogramGraphPane_UpdateGraph_Frequency; XAxis.Scale.Min = YAxis.Scale.Min = 0; XAxis.Scale.MinAuto = XAxis.Scale.MaxAuto = YAxis.Scale.MinAuto = YAxis.Scale.MaxAuto = false; if (!double.IsNaN(Settings.Default.AreaCVMaxCV)) { XAxis.Scale.Max = Settings.Default.AreaCVMaxCV; } else { XAxis.Scale.Max = _areaCVGraphData.MaxCV * factor + Settings.Default.AreaCVHistogramBinWidth; } if (!double.IsNaN(Settings.Default.AreaCVMaxFrequency)) { YAxis.Scale.Max = Settings.Default.AreaCVMaxFrequency; } else { YAxis.Scale.Max = _areaCVGraphData.MaxFrequency + heightFactor * height; } AxisChange(); }