private void ok_btn_clk(object sender, RoutedEventArgs e)
{
if (Name_txt.Text == "" || Path_txt.Text == "")
{
MessageBox.Show(Message_Helper.DB_NAME_PATH_NULL_Message);
return;
}
if (!File.Exists(Path_txt.Text))
{
MessageBox.Show(Message_Helper.DB_PATH_NOT_EXIST_Message);
return;
}
Database new_database = new Database(Name_txt.Text, Path_txt.Text);
bool is_in = false;
for (int i = 0; i < MainW.databases.Count; ++i)
{
if (MainW.db_listView.SelectedIndex != i && MainW.databases[i].DB_Name == new_database.DB_Name)
{
is_in = true;
break;
}
}
if (is_in)
{
MessageBox.Show(Message_Helper.NAME_IS_USED_Message);
return;
}
if (!Config_Helper.IsNameRight(new_database.DB_Name))
{
MessageBox.Show(Message_Helper.NAME_WRONG);
return;
}
if ((bool)this.add_con_cbx.IsChecked)
{
string path = Path_txt.Text;
string old_path = path;
path = path.Replace(".fasta", "_con.fasta");
Path_txt.Text = path;
if (!File_Helper.add_database_containment(old_path, path, Config_Helper.containment_path))
{
return;
}
new_database.DB_Path = Path_txt.Text;
MessageBox.Show(Message_Helper.DB_CONTAINMENT_PATH_Message + new_database.DB_Path + ".");
}
int index = MainW.db_listView.SelectedIndex;
MainW.databases[index] = new_database;
MainW.db_listView.Items.Refresh();
MainW.is_update[0] = true;
MainW.is_update_f();
MainW.db_listView.SelectedItem = new_database;
MainW.db_listView.ScrollIntoView(new_database);
this.Close();
}
private void ok_btn_clk(object sender, RoutedEventArgs e)
{
if (Name_txt.Text == "" || Path_txt.Text == "")
{
MessageBox.Show(Message_Helper.DB_NAME_PATH_NULL_Message);
return;
}
if (!File.Exists(Path_txt.Text))
{
MessageBox.Show(Message_Helper.DB_PATH_NOT_EXIST_Message);
return;
}
Database new_database = new Database(Name_txt.Text, Path_txt.Text);
if (MainW.databases.Contains(new_database))
{
MessageBox.Show(Message_Helper.NAME_IS_USED_Message);
return;
}
if (!Config_Helper.IsNameRight(new_database.DB_Name))
{
MessageBox.Show(Message_Helper.NAME_WRONG);
return;
}
if ((bool)this.add_con_cbx.IsChecked)
{
string path = Path_txt.Text;
string old_path = path;
path = path.Replace(".fasta", "_contaminant.fasta");
Path_txt.Text = path;
if (!File_Helper.add_database_containment(old_path, path, Config_Helper.containment_path))
{
return;
}
new_database.DB_Path = Path_txt.Text;
MessageBox.Show(Message_Helper.DB_CONTAINMENT_PATH_Message + new_database.DB_Path + ".");
}
MainW.add_databases.Add(new_database);
MainW.databases.Add(new_database);
MainW.is_update[0] = true;
MainW.is_update_f();
MainW.db_listView.SelectedItem = new_database;
MainW.db_listView.ScrollIntoView(new_database);
this.Close();
if (Application.Current.Properties["ArbitraryArgName"] != null)
{
MainW.is_update[0] = false;
bool save_ok = File_Helper.save_DB(Config_Helper.database_ini, MainW.databases);
MainW.Close();
}
}
private void Apply_btn_clk(object sender, RoutedEventArgs e)
{
string name = this.name_txt.Text;
string cleave = this.cleave_txt.Text;
string ignore = this.ignore_txt.Text;
ComboBoxItem cbi = this.N_C_comboBox.SelectedItem as ComboBoxItem;
string n_c = cbi.Content as string;
switch (n_c)
{
case "N-term":
n_c = "N";
break;
case "C-term":
n_c = "C";
break;
}
bool is_flag = true;
for (int i = 0; i < cleave.Length; ++i)
{
if (cleave[i] < 'A' || cleave[i] > 'Z')
{
is_flag = false;
break;
}
}
if (!is_flag)
{
MessageBox.Show(Message_Helper.EN_CLEAVE_A_TO_Z_Message);
return;
}
if (cleave == "")
{
MessageBox.Show(Message_Helper.EN_CLEAVE_NULL_Message);
return;
}
is_flag = true;
for (int i = 0; i < ignore.Length; ++i)
{
if (ignore[i] < 'A' || ignore[i] > 'Z')
{
is_flag = false;
break;
}
}
if (!is_flag)
{
MessageBox.Show(Message_Helper.EN_IGNORE_A_TO_Z_Message);
return;
}
if (ignore == "")
{
ignore = "_";
}
Enzyme enzyme = new Enzyme(name, cleave, ignore, n_c);
if (mainW.enzymes.Contains(enzyme))
{
MessageBox.Show(Message_Helper.NAME_IS_USED_Message);
return;
}
if (!Config_Helper.IsNameRight(enzyme.Name))
{
MessageBox.Show(Message_Helper.NAME_WRONG);
return;
}
mainW.add_enzymes.Add(enzyme);
mainW.enzymes.Add(enzyme);
mainW.is_update[3] = true;
mainW.is_update_f();
mainW.enzyme_listView.SelectedItem = enzyme;
mainW.enzyme_listView.ScrollIntoView(enzyme);
this.Close();
}
private void Apply_btn_clk(object sender, RoutedEventArgs e)
{
string name = this.name_txt.Text;
Element element = new Element(name);
bool is_in = false;
for (int i = 0; i < mainW.elements.Count; ++i)
{
if (mainW.element_listView.SelectedIndex != i && mainW.elements[i].Name == element.Name)
{
is_in = true;
break;
}
}
if (is_in)
{
MessageBox.Show(Message_Helper.NAME_IS_USED_Message);
return;
}
if (!Config_Helper.IsNameRight(element.Name))
{
MessageBox.Show(Message_Helper.NAME_WRONG);
return;
}
List <double> mass_list = new List <double>();
List <double> ratio_list = new List <double>();
for (int i = 0; i < this.grid.RowDefinitions.Count; ++i)
{
if (this.grid.Children[i].Visibility == Visibility.Collapsed)
{
continue;
}
StackPanel sp = this.grid.Children[i] as StackPanel;
TextBox mass_tbx = sp.Children[1] as TextBox;
TextBox ratio_tbx = sp.Children[3] as TextBox;
string mass_str = mass_tbx.Text;
string ratio_str = ratio_tbx.Text;
if (!Config_Helper.IsDecimalAllowed(mass_str) || !Config_Helper.IsDecimalAllowed(ratio_str))
{
MessageBox.Show(Message_Helper.EL_MASS_RATIO_DOUBLE_Message);
return;
}
mass_list.Add(double.Parse(mass_str));
ratio_list.Add(double.Parse(ratio_str));
}
double all_ratio = 0.0;
double max_mass = 0.0, max_ratio = 0.0;
for (int i = 0; i < mass_list.Count; ++i)
{
all_ratio += ratio_list[i];
if (ratio_list[i] > max_ratio)
{
max_ratio = ratio_list[i];
max_mass = mass_list[i];
}
}
if (Math.Abs(all_ratio - 1.0) >= 1.0e-9)
{
MessageBox.Show(Message_Helper.EL_SUM_RATIO_ONE_Message);
return;
}
element.MMass = max_mass;
element.Mass = mass_list;
element.Ratio = ratio_list;
element.update_mass_str();
int index = mainW.element_listView.SelectedIndex;
mainW.elements[index] = element;
mainW.element_listView.Items.Refresh();
mainW.is_update[5] = true;
mainW.is_update_f();
mainW.element_listView.SelectedItem = element;
mainW.element_listView.ScrollIntoView(element);
this.Close();
}
private void Apply_btn_clk(object sender, RoutedEventArgs e)
{
string name = name_txt.Text;
if (name == "")
{
MessageBox.Show(Message_Helper.QU_NAME_NULL_Message);
return;
}
Quantification new_q = new Quantification(name);
for (int i = 0; i < this.grid.RowDefinitions.Count; ++i)
{
if (this.grid.Children[i].Visibility == Visibility.Collapsed)
{
continue;
}
StackPanel sp = this.grid.Children[i] as StackPanel;
TextBox aa_tbx = sp.Children[1] as TextBox;
TextBox label0_tbx = sp.Children[3] as TextBox;
TextBox label1_tbx = sp.Children[5] as TextBox;
string aa_str = aa_tbx.Text;
string label0_str = label0_tbx.Text;
string label1_str = label1_tbx.Text;
bool is_right = false;
if (aa_str.Length == 1 && (aa_str[0] == '*' || (aa_str[0] >= 'A' && aa_str[0] <= 'Z')))
{
is_right = true;
}
if (!is_right)
{
MessageBox.Show(Message_Helper.QU_AA_A_TO_Z_Message);
return;
}
is_right = false;
for (int j = 0; j < mainW.elements.Count; ++j)
{
if (mainW.elements[j].Name == label0_str)
{
is_right = true;
break;
}
}
if (!is_right)
{
MessageBox.Show(Message_Helper.QU_LABEL0_NAME_Message);
return;
}
is_right = false;
for (int j = 0; j < mainW.elements.Count; ++j)
{
if (mainW.elements[j].Name == label1_str)
{
is_right = true;
break;
}
}
if (!is_right)
{
MessageBox.Show(Message_Helper.QU_LABEL1_NAME_Message);
return;
}
Quant_Simple qs = new Quant_Simple(aa_str[0], label0_str, label1_str);
new_q.All_quant.Add(qs);
}
new_q.All_quant_str = Quantification.get_string(new_q.Name, new_q.All_quant);
bool is_in = false;
for (int i = 0; i < mainW.quantifications.Count; ++i)
{
if (mainW.quant_listView.SelectedIndex != i && mainW.quantifications[i].Name == new_q.Name)
{
is_in = true;
break;
}
}
if (is_in)
{
MessageBox.Show(Message_Helper.NAME_IS_USED_Message);
return;
}
if (!Config_Helper.IsNameRight(new_q.Name))
{
MessageBox.Show(Message_Helper.NAME_WRONG);
return;
}
int index = mainW.quant_listView.SelectedIndex;
mainW.quantifications[index] = new_q;
mainW.quant_listView.Items.Refresh();
mainW.is_update[2] = true;
mainW.is_update_f();
mainW.quant_listView.SelectedItem = new_q;
mainW.quant_listView.ScrollIntoView(new_q);
this.Close();
}
private void apply_btn_clk(object sender, RoutedEventArgs e)
{
int row_Count = 0;
for (int i = 0; i < this.element_grid.RowDefinitions.Count; ++i)
{
StackPanel sp = this.element_grid.Children[i] as StackPanel;
if (sp.Visibility != Visibility.Collapsed)
{
++row_Count;
}
}
if (row_Count == 0)
{
MessageBox.Show(Message_Helper.EE_NULL_Message);
return;
}
List <Element_composition> element_composition = new List <Element_composition>();
for (int i = 0; i < this.element_grid.RowDefinitions.Count; ++i)
{
StackPanel sp = this.element_grid.Children[i] as StackPanel;
if (sp.Visibility == Visibility.Collapsed)
{
continue;
}
TextBlock name_tbk = sp.Children[1] as TextBlock;
TextBox number_tbx = sp.Children[3] as TextBox;
bool is_Digit = Config_Helper.IsIntegerAllowed(number_tbx.Text);
if (!is_Digit)
{
MessageBox.Show(Message_Helper.EE_INPUT_NUMBER_Message);
return;
}
element_composition.Add(new Element_composition(name_tbk.Text, int.Parse(number_tbx.Text), (int)Element.index_hash[name_tbk.Text]));
}
string element_str = ""; //根据元素的组成生成字符串，并同时计算质量
double element_mass = 0.0;
if (med != null)
{
for (int i = 0; i < element_composition.Count; ++i)
{
element_str += element_composition[i].Element_name + "(" + element_composition[i].Element_number + ")";
element_mass += med.mainW.elements[element_composition[i].Element_index].MMass * element_composition[i].Element_number;
}
}
else if (mad != null)
{
for (int i = 0; i < element_composition.Count; ++i)
{
element_str += element_composition[i].Element_name + "(" + element_composition[i].Element_number + ")";
element_mass += mad.mainW.elements[element_composition[i].Element_index].MMass * element_composition[i].Element_number;
}
}
else if (aaed != null)
{
for (int i = 0; i < element_composition.Count; ++i)
{
element_str += element_composition[i].Element_name + "(" + element_composition[i].Element_number + ")";
element_mass += mainW.elements[element_composition[i].Element_index].MMass * element_composition[i].Element_number;
}
}
if (mad != null)
{
mad.composition_txt.Background = new SolidColorBrush(Colors.Transparent);
mad.mass_txt.Background = new SolidColorBrush(Colors.Transparent);
mad.composition_txt.Text = element_str;
mad.mass_txt.Text = element_mass.ToString("F6");
}
else if (aaed != null)
{
aaed.composition_txt.Text = element_str;
aaed.mass_txt.Text = element_mass.ToString("F6");
}
else if (med != null)
{
med.composition_txt.Text = element_str;
med.mass_txt.Text = element_mass.ToString("F6");
}
this.Close();
}
private void apply_btn_clk(object sender, RoutedEventArgs e)
{
string name = name_txt.Text;
string composition = composition_txt.Text;
string mass_str = mass_txt.Text;
ComboBoxItem cbi = position_comboBox.SelectedItem as ComboBoxItem;
string position = cbi.Content as string;
string position_display = "";
string site = site_txt.Text;
string neutral_loss = Neutral_Loss_txt.Text;
bool is_common = (bool)Common_checkBox.IsChecked;
if (name == "" || composition == "" || !Config_Helper.IsDecimalAllowed(mass_str) || site == "")
{
if (name == "")
{
name_txt.Background = new SolidColorBrush(Colors.Red);
}
if (composition == "")
{
composition_txt.Background = new SolidColorBrush(Colors.Red);
}
if (!Config_Helper.IsDecimalAllowed(mass_str))
{
mass_txt.Background = new SolidColorBrush(Colors.Red);
}
if (site == "")
{
site_txt.Background = new SolidColorBrush(Colors.Red);
}
if (neutral_loss != "")
{
string[] strs = neutral_loss.Split(new char[] { ';' }, StringSplitOptions.RemoveEmptyEntries);
for (int i = 0; i < strs.Length; ++i)
{
if (!Config_Helper.IsDecimalAllowed(strs[i]))
{
Neutral_Loss_txt.Background = new SolidColorBrush(Colors.Red);
}
}
}
MessageBox.Show(Message_Helper.MO_INPUT_WRONG_Message);
return;
}
if (Site_wrong(site))
{
site_txt.Background = new SolidColorBrush(Colors.Red);
MessageBox.Show(Message_Helper.MO_AA_REPEAT);
return;
}
ObservableCollection <double> neutral_loss_list = new ObservableCollection <double>(); //默认以;进行分隔
if (neutral_loss != "")
{
string[] strs = neutral_loss.Split(new char[] { ';' }, StringSplitOptions.RemoveEmptyEntries);
for (int i = 0; i < strs.Length; ++i)
{
if (!Config_Helper.IsDecimalAllowed(strs[i]))
{
Neutral_Loss_txt.Background = new SolidColorBrush(Colors.Red);
MessageBox.Show(Message_Helper.MO_INPUT_WRONG_Message);
return;
}
neutral_loss_list.Add(double.Parse(strs[i]));
}
}
switch (position)
{
case "Anywhere":
position = "NORMAL";
position_display = "NORMAL";
break;
case "PepN-term":
position = "PEP_N";
position_display = "Peptide N-term";
break;
case "PepC-term":
position = "PEP_C";
position_display = "Peptide C-term";
break;
case "ProN-term":
position = "PRO_N";
position_display = "Protein N-term";
break;
case "ProC-term":
position = "PRO_C";
position_display = "Protein C-term";
break;
}
Modification modification = new Modification(name, is_common, site, position, double.Parse(mass_str), composition, neutral_loss_list);
modification.Position_Display = position_display;
if (mainW.modifications.Contains(modification))
{
MessageBox.Show(Message_Helper.NAME_IS_USED_Message);
return;
}
if (!Config_Helper.IsNameRight(modification.Name))
{
MessageBox.Show(Message_Helper.NAME_WRONG);
return;
}
mainW.add_modifications.Add(modification);
mainW.modifications.Add(modification);
mainW.is_update[1] = true;
mainW.is_update_f();
mainW.mod_listView.SelectedItem = modification;
mainW.mod_listView.ScrollIntoView(modification);
this.Close();
}
