public void setUp()
{
S = new Model(2,4);
if (S == null);
{
}
}
private static void printAnnotation(SBase sb)
{
string id = "";
if (sb.isSetId())
{
id = sb.getId();
}
printAnnotation(sb, id);
}
/** */
/* libsbml-internal */
public int checkCompatibility(SBase arg0)
{
int ret = libsbmlPINVOKE.SBase_checkCompatibility(swigCPtr, SBase.getCPtr(arg0));
return ret;
}
internal static HandleRef getCPtr(SBase obj)
{
return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr;
}
/**
* Returns @c true if this object's set of XML namespaces are a subset
* of the given object's XML namespaces.
*
* *
*
* The SBMLNamespaces object encapsulates SBML Level/Version/namespaces
* information. It is used to communicate the SBML Level, Version, and (in
* Level 3) packages used in addition to SBML Level 3 Core. A
* common approach to using libSBML's SBMLNamespaces facilities is to create an
* SBMLNamespaces object somewhere in a program once, then hand that object
* as needed to object constructors that accept SBMLNamespaces as arguments.
*
*
*
* @param sb an object to compare with respect to namespaces
*
* @return bool, @c true if this object's collection of namespaces is
* a subset of @p sb's, @c false otherwise.
*/
public bool matchesRequiredSBMLNamespacesForAddition(SBase sb)
{
bool ret = libsbmlPINVOKE.SBase_matchesRequiredSBMLNamespacesForAddition__SWIG_0(swigCPtr, SBase.getCPtr(sb));
return ret;
}
static void testClone(SBase s)
{
string ename = s.getElementName();
SBase c = s.clone();
if ( c is Compartment ) { Compartment x = (s as Compartment).clone(); c = x; }
else if ( c is CompartmentType ) { CompartmentType x = (s as CompartmentType).clone(); c = x; }
else if ( c is Constraint ) { Constraint x = (s as Constraint).clone(); c = x; }
else if ( c is Delay ) { Delay x = (s as Delay).clone(); c = x; }
else if ( c is Event ) { Event x = (s as Event).clone(); c = x; }
else if ( c is EventAssignment ) { EventAssignment x = (s as EventAssignment).clone(); c = x; }
else if ( c is FunctionDefinition ) { FunctionDefinition x = (s as FunctionDefinition).clone(); c = x; }
else if ( c is InitialAssignment ) { InitialAssignment x = (s as InitialAssignment).clone(); c = x; }
else if ( c is KineticLaw ) { KineticLaw x = (s as KineticLaw).clone(); c = x; }
// currently return type of ListOf::clone() is SBase
else if ( c is ListOf ) { SBase x = (s as ListOf).clone(); c = x; }
else if ( c is Model ) { Model x = (s as Model).clone(); c = x; }
else if ( c is Parameter ) { Parameter x = (s as Parameter).clone(); c = x; }
else if ( c is Reaction ) { Reaction x = (s as Reaction).clone(); c = x; }
else if ( c is AlgebraicRule ) { AlgebraicRule x = (s as AlgebraicRule).clone(); c = x; }
else if ( c is AssignmentRule ) { AssignmentRule x = (s as AssignmentRule).clone(); c = x; }
else if ( c is RateRule ) { RateRule x = (s as RateRule).clone(); c = x; }
else if ( c is SBMLDocument ) { SBMLDocument x = (s as SBMLDocument).clone(); c = x; }
else if ( c is Species ) { Species x = (s as Species).clone(); c = x; }
else if ( c is SpeciesReference ) { SpeciesReference x = (s as SpeciesReference).clone(); c = x; }
else if ( c is SpeciesType ) { SpeciesType x = (s as SpeciesType).clone(); c = x; }
else if ( c is SpeciesReference ) { SpeciesReference x = (s as SpeciesReference).clone(); c = x; }
else if ( c is StoichiometryMath ) { StoichiometryMath x = (s as StoichiometryMath).clone(); c = x; }
else if ( c is Trigger ) { Trigger x = (s as Trigger).clone(); c = x; }
else if ( c is Unit ) { Unit x = (s as Unit).clone(); c = x; }
else if ( c is UnitDefinition ) { UnitDefinition x = (s as UnitDefinition).clone(); c = x; }
else if ( c is ListOfCompartmentTypes ) { ListOfCompartmentTypes x = (s as ListOfCompartmentTypes).clone(); c = x; }
else if ( c is ListOfCompartments ) { ListOfCompartments x = (s as ListOfCompartments).clone(); c = x; }
else if ( c is ListOfConstraints ) { ListOfConstraints x = (s as ListOfConstraints).clone(); c = x; }
else if ( c is ListOfEventAssignments ) { ListOfEventAssignments x = (s as ListOfEventAssignments).clone(); c = x; }
else if ( c is ListOfEvents ) { ListOfEvents x = (s as ListOfEvents).clone(); c = x; }
else if ( c is ListOfFunctionDefinitions ) { ListOfFunctionDefinitions x = (s as ListOfFunctionDefinitions).clone(); c = x; }
else if ( c is ListOfInitialAssignments ) { ListOfInitialAssignments x = (s as ListOfInitialAssignments).clone(); c = x; }
else if ( c is ListOfParameters ) { ListOfParameters x = (s as ListOfParameters).clone(); c = x; }
else if ( c is ListOfReactions ) { ListOfReactions x = (s as ListOfReactions).clone(); c = x; }
else if ( c is ListOfRules ) { ListOfRules x = (s as ListOfRules).clone(); c = x; }
else if ( c is ListOfSpecies ) { ListOfSpecies x = (s as ListOfSpecies).clone(); c = x; }
else if ( c is ListOfSpeciesReferences ) { ListOfSpeciesReferences x = (s as ListOfSpeciesReferences).clone(); c = x; }
else if ( c is ListOfSpeciesTypes ) { ListOfSpeciesTypes x = (s as ListOfSpeciesTypes).clone(); c = x; }
else if ( c is ListOfUnitDefinitions ) { ListOfUnitDefinitions x = (s as ListOfUnitDefinitions).clone(); c = x; }
else if ( c is ListOfUnits ) { ListOfUnits x = (s as ListOfUnits).clone(); c = x; }
else
{
ERR("[testClone] Error: (" + ename + ") : clone() failed.");
return;
}
if ( c == null)
{
ERR("[testClone] Error: (" + ename + ") : clone() failed.");
return;
}
string enameClone = c.getElementName();
if ( ename == enameClone )
{
//Console.Out.WriteLine("[testClone] OK: (" + ename + ") clone(" + enameClone + ") : type match.");
OK();
}
else
{
ERR("[testClone] Error: (" + ename + ") clone(" + enameClone + ") : type mismatch.");
}
}
/** */
/* libsbml-internal */
public new void connectToParent(SBase sbase)
{
libsbmlPINVOKE.SBasePlugin_connectToParent(swigCPtr, SBase.getCPtr(sbase));
}
/**
* Inserts an item at a given position in this ListOf's list of items.
*
* This variant of the method makes a clone of the @p item handed to it.
* This means that when the ListOf is destroyed, the original @p item will
* <em>not</em> be destroyed.
*
* @param location the location in the list where to insert the item.
* @param item the item to be inserted to the list.
*
*
* @return integer value indicating success/failure of the
* function. @if clike The value is drawn from the
* enumeration #OperationReturnValues_t. @endif The possible values
* returned by this function are:
* @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
* @li @link libsbml#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink
*
* @see insertAndOwn(int location, SBase item)
*/
public int insert(int location, SBase item)
{
int ret = libsbmlPINVOKE.ListOf_insert(swigCPtr, location, SBase.getCPtr(item));
return ret;
}
public virtual bool filter(SBase element)
{
bool ret = (SwigDerivedClassHasMethod("filter", swigMethodTypes0) ? libsbmlPINVOKE.ElementFilter_filterSwigExplicitElementFilter(swigCPtr, SBase.getCPtr(element)) : libsbmlPINVOKE.ElementFilter_filter(swigCPtr, SBase.getCPtr(element)));
return ret;
}
private static void printNotes(SBase sb, string id)
{
if (!sb.isSetNotes()) return;
Console.WriteLine("----- " + sb.getElementName() + " (" + id
+ ") notes -----");
Console.WriteLine(sb.getNotesString());
Console.WriteLine();
}
private static void printNotes(SBase sb)
{
string id = "";
if (sb.isSetId())
{
id = sb.getId();
}
printNotes(sb, id);
}
/** */
public new bool isValidTypeForList(SBase item)
{
bool ret = libsbmlPINVOKE.SBasePlugin_isValidTypeForList(swigCPtr, SBase.getCPtrAndDisown(item));
return ret;
}
void setOrAppendNotes(SBase sbase, string note)
{
if (sbase.isSetNotes ()) {
sbase.appendNotes (note);
} else {
sbase.setNotes (note);
}
}
private static void printAnnotation(SBase sb, string id)
{
if (!sb.isSetAnnotation()) return;
Console.Write("----- " + sb.getElementName() + " (" + id
+ ") annotation -----" + Environment.NewLine);
Console.Write(sb.getAnnotationString() + Environment.NewLine);
Console.Write(Environment.NewLine);
}
/**
* Adds an item to the end of this ListOf's list of items.
*
* This method makes a clone of the @p item handed to it. This means that
* when the ListOf object is destroyed, the original items will not be
* destroyed. For a method with an alternative ownership behavior, see the
* ListOf::appendAndOwn(@if java SBase@endif) method.
*
* @param item the item to be added to the list.
*
*
* @return integer value indicating success/failure of the
* function. @if clike The value is drawn from the
* enumeration #OperationReturnValues_t. @endif The possible values
* returned by this function are:
* @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
* @li @link libsbml#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink
*
* @see appendAndOwn(SBase disownedItem)
* @see appendFrom(ListOf list)
*/
public int append(SBase item)
{
int ret = libsbmlPINVOKE.ListOf_append(swigCPtr, SBase.getCPtr(item));
return ret;
}
/**
* Adds an item to the end of this ListOf's list of items.
*
* This method does not clone the @p disownedItem handed to it; instead, it assumes
* ownership of it. This means that when the ListOf is destroyed, the item
* will be destroyed along with it. For a method with an alternative
* ownership behavior, see the ListOf::append(SBase item) method.
*
* @param disownedItem the item to be added to the list.
*
*
* @return integer value indicating success/failure of the
* function. @if clike The value is drawn from the
* enumeration #OperationReturnValues_t. @endif The possible values
* returned by this function are:
* @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
* @li @link libsbml#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink
*
* @see append(SBase item)
* @see appendFrom(ListOf list)
*/
public int appendAndOwn(SBase disownedItem)
{
int ret = libsbmlPINVOKE.ListOf_appendAndOwn(swigCPtr, SBase.getCPtrAndDisown(disownedItem));
return ret;
}
/**
* Takes a list of CVTerm objects and creates a complete SBML annotation
* around it.
*
* This essentially takes the given SBML object, reads out the CVTerm
* objects attached to it, calls @if clike createRDFAnnotation()@else
* RDFAnnotationParser::createRDFAnnotation()@endif to create an RDF
* annotation to hold the terms, and finally calls @if clike
* createAnnotation()@else
* RDFAnnotationParser::createAnnotation()@endif to wrap the result as
* an SBML <code><annotation></code> element.
*
* @param obj the SBML object to start from
*
* @return the XMLNode tree corresponding to the annotation.
*
* @if notclike @note Because this is a @em static method, the non-C++
* language interfaces for libSBML will contain two variants. One will
* be a static method on the class (i.e., RDFAnnotationParser), and the
* other will be a standalone top-level function with the name
* RDFAnnotationParser_parseCVTerms(). They are functionally
* identical. @endif
*/
public static XMLNode parseCVTerms(SBase obj)
{
IntPtr cPtr = libsbmlPINVOKE.RDFAnnotationParser_parseCVTerms(SBase.getCPtr(obj));
XMLNode ret = (cPtr == IntPtr.Zero) ? null : new XMLNode(cPtr, true);
return ret;
}
/**
* Inserts an item at a given position in this ListOf's list of items.
*
* This variant of the method does not make a clone of the @p disownedItem handed to it.
* This means that when the ListOf is destroyed, the original @p item
* <em>will</em> be destroyed.
*
* @param location the location where to insert the item
* @param disownedItem the item to be inserted to the list
*
*
* @return integer value indicating success/failure of the
* function. @if clike The value is drawn from the
* enumeration #OperationReturnValues_t. @endif The possible values
* returned by this function are:
* @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
* @li @link libsbml#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink
*
* @see insert(int location, SBase item)
*/
public int insertAndOwn(int location, SBase disownedItem)
{
int ret = libsbmlPINVOKE.ListOf_insertAndOwn(swigCPtr, location, SBase.getCPtrAndDisown(disownedItem));
return ret;
}
/**
* Reads the model history stored in @p obj and creates the
* XML structure for an SBML annotation representing that history.
*
* @param obj any SBase object
*
* @return the XMLNode corresponding to an annotation containing
* MIRIAM-compliant model history information in RDF format.
*
* @if notclike @note Because this is a @em static method, the non-C++
* language interfaces for libSBML will contain two variants. One will
* be a static method on the class (i.e., RDFAnnotationParser), and the
* other will be a standalone top-level function with the name
* RDFAnnotationParser_parseOnlyModelHistory(). They are functionally
* identical. @endif
*/
public static XMLNode parseOnlyModelHistory(SBase obj)
{
IntPtr cPtr = libsbmlPINVOKE.RDFAnnotationParser_parseOnlyModelHistory(SBase.getCPtr(obj));
XMLNode ret = (cPtr == IntPtr.Zero) ? null : new XMLNode(cPtr, false);
return ret;
}
/// <summary>
/// The function performing the filtering, here we just check
/// that we have a valid element, and that it has notes.
/// </summary>
/// <param name="element">the current element</param>
/// <returns><b>true</b> if element is to be included, <b>false</b> otherwise</returns>
public override bool filter(SBase element)
{
// return in case we don't have a valid element
if (element == null || !element.isSetNotes())
return false;
// otherwise we have notes set and want to keep the element
if (!element.isSetId())
Console.WriteLine(" found : {0}", element.getId());
else
Console.WriteLine(" found element without id");
return true;
}
public void prepend(SBase item)
{
libsbmlPINVOKE.SBaseList_prepend(swigCPtr, SBase.getCPtr(item));
}
static void testListOfRemove(ListOf lof, SBase s)
{
string ename = s.getElementName();
lof.append(s);
SBase c = lof.get(0);
if ( c is CompartmentType ) { CompartmentType x = (lof as ListOfCompartmentTypes).remove(0); c = x; }
else if ( c is Compartment ) { Compartment x = (lof as ListOfCompartments).remove(0); c = x; }
else if ( c is Constraint ) { Constraint x = (lof as ListOfConstraints).remove(0); c = x; }
else if ( c is EventAssignment ) { EventAssignment x = (lof as ListOfEventAssignments).remove(0); c = x; }
else if ( c is Event ) { Event x = (lof as ListOfEvents).remove(0); c = x; }
else if ( c is FunctionDefinition ) { FunctionDefinition x = (lof as ListOfFunctionDefinitions).remove(0); c = x; }
else if ( c is InitialAssignment ) { InitialAssignment x = (lof as ListOfInitialAssignments).remove(0); c = x; }
else if ( c is Parameter ) { Parameter x = (lof as ListOfParameters).remove(0); c = x; }
else if ( c is Reaction ) { Reaction x = (lof as ListOfReactions).remove(0); c = x; }
else if ( c is Rule ) { Rule x = (lof as ListOfRules).remove(0); c = x; }
else if ( c is Species ) { Species x = (lof as ListOfSpecies).remove(0); c = x; }
else if ( c is SpeciesReference ) {SimpleSpeciesReference x = (lof as ListOfSpeciesReferences).remove(0); c = x; }
else if ( c is SpeciesType ) { SpeciesType x = (lof as ListOfSpeciesTypes).remove(0); c = x; }
else if ( c is UnitDefinition ) { UnitDefinition x = (lof as ListOfUnitDefinitions).remove(0); c = x; }
else if ( c is Unit ) { Unit x = (lof as ListOfUnits).remove(0); c = x; }
else
{
ERR("[testListOfRemove] Error: (" + ename + ") : ListOfXXX::remove() failed.");
return;
}
if ( c == null)
{
ERR("[testListOfRemove] Error: (" + ename + ") : ListOfXXX::remove() failed.");
return;
}
string enameGet = c.getElementName();
if ( ename == enameGet )
{
//Console.Out.WriteLine("[testListOfRemove] OK: (" + ename + ") remove(" + enameGet + ") : type match.");
OK();
}
else
{
ERR("[testListOfRemove] Error: (" + ename + ") remove(" + enameGet + ") : type mismatch.");
}
}
public virtual int transform(SBase element)
{
int ret = (SwigDerivedClassHasMethod("transform", swigMethodTypes0) ? libsbmlPINVOKE.IdentifierTransformer_transformSwigExplicitIdentifierTransformer(swigCPtr, SBase.getCPtr(element)) : libsbmlPINVOKE.IdentifierTransformer_transform(swigCPtr, SBase.getCPtr(element)));
return ret;
}
/**
* Returns @c true if this object's set of XML namespaces are the same
* as the given object's XML namespaces.
*
* *
*
* The SBMLNamespaces object encapsulates SBML Level/Version/namespaces
* information. It is used to communicate the SBML Level, Version, and (in
* Level 3) packages used in addition to SBML Level 3 Core. A
* common approach to using libSBML's SBMLNamespaces facilities is to create an
* SBMLNamespaces object somewhere in a program once, then hand that object
* as needed to object constructors that accept SBMLNamespaces as arguments.
*
*
*
* @param sb an object to compare with respect to namespaces
*
* @return bool, @c true if this object's collection of namespaces is
* the same as @p sb's, @c false otherwise.
*/
public bool matchesSBMLNamespaces(SBase sb)
{
bool ret = libsbmlPINVOKE.SBase_matchesSBMLNamespaces__SWIG_0(swigCPtr, SBase.getCPtr(sb));
return ret;
}
public static SBase DowncastSBase(IntPtr cPtr, bool owner)
{
if (cPtr.Equals(IntPtr.Zero)) return null;
SBase sb = new SBase(cPtr, false);
string pkgName = sb.getPackageName();
if (pkgName == "core")
{
switch( sb.getTypeCode() )
{
case (int) libsbml.SBML_COMPARTMENT:
return new Compartment(cPtr, owner);
case (int) libsbml.SBML_COMPARTMENT_TYPE:
return new CompartmentType(cPtr, owner);
case (int) libsbml.SBML_CONSTRAINT:
return new Constraint(cPtr, owner);
case (int) libsbml.SBML_DOCUMENT:
return new SBMLDocument(cPtr, owner);
case (int) libsbml.SBML_DELAY:
return new Delay(cPtr, owner);
case (int) libsbml.SBML_EVENT:
return new Event(cPtr, owner);
case (int) libsbml.SBML_EVENT_ASSIGNMENT:
return new EventAssignment(cPtr, owner);
case (int) libsbml.SBML_FUNCTION_DEFINITION:
return new FunctionDefinition(cPtr, owner);
case (int) libsbml.SBML_INITIAL_ASSIGNMENT:
return new InitialAssignment(cPtr, owner);
case (int) libsbml.SBML_KINETIC_LAW:
return new KineticLaw(cPtr, owner);
case (int) libsbml.SBML_LIST_OF:
string name = sb.getElementName();
if(name == "listOf")
{
return new ListOf(cPtr, owner);
}
else if(name == "listOfCompartments")
{
return new ListOfCompartments(cPtr, owner);
}
else if(name == "listOfCompartmentTypes")
{
return new ListOfCompartmentTypes(cPtr, owner);
}
else if(name == "listOfConstraints")
{
return new ListOfConstraints(cPtr, owner);
}
else if(name == "listOfEvents")
{
return new ListOfEvents(cPtr, owner);
}
else if(name == "listOfEventAssignments")
{
return new ListOfEventAssignments(cPtr, owner);
}
else if(name == "listOfFunctionDefinitions")
{
return new ListOfFunctionDefinitions(cPtr, owner);
}
else if(name == "listOfInitialAssignments")
{
return new ListOfInitialAssignments(cPtr, owner);
}
else if(name == "listOfParameters")
{
return new ListOfParameters(cPtr, owner);
}
else if(name == "listOfLocalParameters")
{
return new ListOfLocalParameters(cPtr, owner);
}
else if(name == "listOfReactions")
{
return new ListOfReactions(cPtr, owner);
}
else if(name == "listOfRules")
{
return new ListOfRules(cPtr, owner);
}
else if(name == "listOfSpecies")
{
return new ListOfSpecies(cPtr, owner);
}
else if(name == "listOfUnknowns")
{
return new ListOfSpeciesReferences(cPtr, owner);
}
else if(name == "listOfReactants")
{
return new ListOfSpeciesReferences(cPtr, owner);
}
else if(name == "listOfProducts")
{
return new ListOfSpeciesReferences(cPtr, owner);
}
else if(name == "listOfModifiers")
{
return new ListOfSpeciesReferences(cPtr, owner);
}
else if(name == "listOfSpeciesTypes")
{
return new ListOfSpeciesTypes(cPtr, owner);
}
else if(name == "listOfUnits")
{
return new ListOfUnits(cPtr, owner);
}
else if(name == "listOfUnitDefinitions")
{
return new ListOfUnitDefinitions(cPtr, owner);
}
return new ListOf(cPtr, owner);
case (int) libsbml.SBML_MODEL:
return new Model(cPtr, owner);
case (int) libsbml.SBML_PARAMETER:
return new Parameter(cPtr, owner);
case (int) libsbml.SBML_PRIORITY:
return new Priority(cPtr, owner);
case (int) libsbml.SBML_LOCAL_PARAMETER:
return new LocalParameter(cPtr, owner);
case (int) libsbml.SBML_REACTION:
return new Reaction(cPtr, owner);
case (int) libsbml.SBML_SPECIES:
return new Species(cPtr, owner);
case (int) libsbml.SBML_SPECIES_REFERENCE:
return new SpeciesReference(cPtr, owner);
case (int) libsbml.SBML_MODIFIER_SPECIES_REFERENCE:
return new ModifierSpeciesReference(cPtr, owner);
case (int) libsbml.SBML_SPECIES_TYPE:
return new SpeciesType(cPtr, owner);
case (int) libsbml.SBML_TRIGGER:
return new Trigger(cPtr, owner);
case (int) libsbml.SBML_UNIT_DEFINITION:
return new UnitDefinition(cPtr, owner);
case (int) libsbml.SBML_UNIT:
return new Unit(cPtr, owner);
case (int) libsbml.SBML_ALGEBRAIC_RULE:
return new AlgebraicRule(cPtr, owner);
case (int) libsbml.SBML_ASSIGNMENT_RULE:
return new AssignmentRule(cPtr, owner);
case (int) libsbml.SBML_RATE_RULE:
return new RateRule(cPtr, owner);
case (int) libsbml.SBML_STOICHIOMETRY_MATH:
return new StoichiometryMath(cPtr, owner);
default:
return new SBase(cPtr, owner);
}
}
else
{
SBMLExtension sbmlext = SBMLExtensionRegistry.getInstance().getExtension(pkgName);
if (sbmlext != null)
{
return sbmlext.DowncastSBase(cPtr,owner);
}
}
return new SBase(cPtr, owner);
}
internal static HandleRef getCPtrAndDisown(SBase obj)
{
HandleRef ptr = new HandleRef(null, IntPtr.Zero);
if (obj != null)
{
ptr = obj.swigCPtr;
obj.swigCMemOwn = false;
}
return ptr;
}
/// <summary>
/// The function actually doing the transforming. This function is called
/// once for each SBase element in the model.
/// </summary>
/// <param name="element">the current element</param>
/// <returns>status code</returns>
public override int transform(SBase element)
{
// return in case we don't have a valid element
if (element == null || element.getTypeCode() == libsbml.SBML_LOCAL_PARAMETER)
return libsbml.LIBSBML_OPERATION_SUCCESS;
// or if there is nothing to do
if (!element.isSetName() || element.getId() == element.getName())
return libsbml.LIBSBML_OPERATION_SUCCESS;
// find the new id
string newId = getValidIdForName(element.getName());
// set it
element.setId(newId);
// remember it
existingIds.Add(newId);
return libsbml.LIBSBML_OPERATION_SUCCESS;
}
/**
* Sets the parent SBML object of this SBML object.
* (Creates a child-parent relationship by the child)
* This function is called when a child element is
* set/added/created by its parent element (e.g. by setXXX,
* addXXX, createXXX, and connectToChild functions of the
* parent element).
*
* @param parent the SBML object to use
*/
/* libsbml-internal */
public void connectToParent(SBase parent)
{
libsbmlPINVOKE.SBase_connectToParent(swigCPtr, SBase.getCPtr(parent));
}
/**
* Takes an SBML object and creates an empty XMLNode corresponding to an
* RDF 'Description' element.
*
* This method is a handy way of creating RDF description objects linked
* by the appropriate 'metaid' field to the given @p object, for
* insertion into RDF annotations in a model. The method retrieves the
* 'metaid' attribute from the @p object passed in as argument, then
* creates an empty element having the following form
* (where <span class='code' style='background-color: #eed0d0'>metaid</span>
* the value of the 'metaid' attribute of the argument):
*
<div class='fragment'>
<rdf:Description rdf:about="#<span style='background-color: #eed0d0'>metaid</span>" xmlns:rdf='http://www.w3.org/1999/02/22-rdf-syntax-ns#'><br>
...<br>
</rdf:Description><br>
</div>
* Note that this method does @em not create a complete annotation or
* even an RDF element; it only creates the 'Description' portion. Callers
* will need to use other methods such as
* @if clike createRDFAnnotation()@else RDFAnnotationParser::createRDFAnnotation()@endif
* to create the rest of the structure for an annotation.
*
* @param obj the object to which the 'Description' refers
*
* @return a new XMLNode containing the 'rdf:Description' element with
* its 'about' attribute value set to the @p object meta identifier.
*
* @see createRDFAnnotation()
*/
public static XMLNode createRDFDescription(SBase obj)
{
IntPtr cPtr = libsbmlPINVOKE.RDFAnnotationParser_createRDFDescription(SBase.getCPtr(obj));
XMLNode ret = (cPtr == IntPtr.Zero) ? null : new XMLNode(cPtr, true);
return ret;
}
