示例#1
0
 public void setUp()
 {
     S = new  Species(3,1);
       if (S == null);
       {
       }
 }
示例#2
0
 public void test_ListOf_clear()
 {
     ListOf lo = new  ListOf();
       SBase sp = new  Species(2,4);
       lo.append(sp);
       lo.append(sp);
       lo.append(sp);
       lo.append(sp);
       lo.append(sp);
       assertTrue( lo.size() == 5 );
       lo.clear(true);
       assertTrue( lo.size() == 0 );
       lo.append(sp);
       lo.append(sp);
       lo.append(sp);
       lo.append(sp);
       lo.appendAndOwn(sp);
       assertTrue( lo.size() == 5 );
       SBase elem;
       elem = lo.get(0);
       elem = null;
       elem = lo.get(1);
       elem = null;
       elem = lo.get(2);
       elem = null;
       elem = lo.get(3);
       elem = null;
       elem = lo.get(4);
       elem = null;
       lo.clear(false);
       assertTrue( lo.size() == 0 );
       lo = null;
 }
 public void setUp()
 {
     C = new  Species(1,2);
       if (C == null);
       {
       }
 }
 public void test_Species_setCharge2()
 {
     Species c = new  Species(2,2);
       int i = c.setCharge(4);
       assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE );
       assertEquals( false, c.isSetCharge() );
       c = null;
 }
示例#5
0
 /**
    * Adds the given species as a reactant with the given stoichiometry
    *
    * @param species the species to be added as reactant
    *
    * @param stoichiometry an optional parameter specifying the
    *        stoichiometry of the product (defaulting to 1)
    *
    * @param id an optional id to be given to the species reference that will
    *        be created. (defaulting to empty string, i.e. not set)
    *
    * @param constant an attribute specifying whether the species reference is
    *        constant or not (defaulting to true)
    *
    *
  * @return integer value indicating success/failure of the
  * function.  @if clike The value is drawn from the
  * enumeration #OperationReturnValues_t. @endif The possible values
  * returned by this function are:
  * @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
    * @li @link libsbml#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink
    * @li @link libsbml#LIBSBML_INVALID_ATTRIBUTE_VALUE LIBSBML_INVALID_ATTRIBUTE_VALUE@endlink
    * @li @link libsbml#LIBSBML_DUPLICATE_OBJECT_ID LIBSBML_DUPLICATE_OBJECT_ID@endlink
    *
    *
  * @note This method should be used with some caution.  The fact that this
  * method @em copies the object passed to it means that the caller will be
  * left holding a physically different object instance than the one contained
  * inside this object.  Changes made to the original object instance (such as
  * resetting attribute values) will <em>not affect the instance in this
  * object</em>.  In addition, the caller should make sure to free the
  * original object if it is no longer being used, or else a memory leak will
  * result.  Please see other methods on this class (particularly a
  * corresponding method whose name begins with the word <code>create</code>)
  * for alternatives that do not lead to these issues.
  *
  *
    *
    * @note the Species object itself is NOT added to the model
    *
    * @see createProduct()
    */
 public int addReactant(Species species, double stoichiometry, string id, bool constant)
 {
     int ret = libsbmlPINVOKE.Reaction_addReactant__SWIG_1(swigCPtr, Species.getCPtr(species), stoichiometry, id, constant);
     return ret;
 }
示例#6
0
 /**
    * Adds the given species as a product with the given stoichiometry
    *
    * @param species the species to be added as product
    *
    * @param stoichiometry an optional parameter specifying the
    *        stoichiometry of the product (defaulting to 1)
    *
    * @param id an optional id to be given to the species reference that will
    *        be created. (defaulting to empty string, i.e. not set)
    *
    * @param constant an attribute specifying whether the species reference is
    *        constant or not (defaulting to true)
    *
    *
  * @return integer value indicating success/failure of the
  * function.  @if clike The value is drawn from the
  * enumeration #OperationReturnValues_t. @endif The possible values
  * returned by this function are:
  * @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
    * @li @link libsbml#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink
    * @li @link libsbml#LIBSBML_INVALID_ATTRIBUTE_VALUE LIBSBML_INVALID_ATTRIBUTE_VALUE@endlink
    * @li @link libsbml#LIBSBML_DUPLICATE_OBJECT_ID LIBSBML_DUPLICATE_OBJECT_ID@endlink
    *
    *
  * @note This method should be used with some caution.  The fact that this
  * method @em copies the object passed to it means that the caller will be
  * left holding a physically different object instance than the one contained
  * inside this object.  Changes made to the original object instance (such as
  * resetting attribute values) will <em>not affect the instance in this
  * object</em>.  In addition, the caller should make sure to free the
  * original object if it is no longer being used, or else a memory leak will
  * result.  Please see other methods on this class (particularly a
  * corresponding method whose name begins with the word <code>create</code>)
  * for alternatives that do not lead to these issues.
  *
  *
    *
    * @note the Species object itself is NOT added to the model
    *
    * @see createProduct()
    */
 public int addProduct(Species species, double stoichiometry, string id)
 {
     int ret = libsbmlPINVOKE.Reaction_addProduct__SWIG_2(swigCPtr, Species.getCPtr(species), stoichiometry, id);
     return ret;
 }
示例#7
0
 public void test_Model_getNumSpeciesWithBoundaryCondition()
 {
     Species s1 = new  Species(2,4);
       Species s2 = new  Species(2,4);
       Species s3 = new  Species(2,4);
       s1.setId( "s1");
       s2.setId( "s2");
       s3.setId( "s3");
       s1.setCompartment( "c1");
       s2.setCompartment( "c2");
       s3.setCompartment( "c3");
       s1.setBoundaryCondition(true);
       s2.setBoundaryCondition(false);
       s3.setBoundaryCondition(true);
       assertTrue( M.getNumSpecies() == 0 );
       assertTrue( M.getNumSpeciesWithBoundaryCondition() == 0 );
       M.addSpecies(s1);
       assertTrue( M.getNumSpecies() == 1 );
       assertTrue( M.getNumSpeciesWithBoundaryCondition() == 1 );
       M.addSpecies(s2);
       assertTrue( M.getNumSpecies() == 2 );
       assertTrue( M.getNumSpeciesWithBoundaryCondition() == 1 );
       M.addSpecies(s3);
       assertTrue( M.getNumSpecies() == 3 );
       assertTrue( M.getNumSpeciesWithBoundaryCondition() == 2 );
 }
示例#8
0
 public void test_L3_Species_hasRequiredAttributes()
 {
     Species s = new  Species(3,1);
       assertEquals( false, s.hasRequiredAttributes() );
       s.setId( "id");
       assertEquals( false, s.hasRequiredAttributes() );
       s.setCompartment( "cell");
       assertEquals( false, s.hasRequiredAttributes() );
       s.setHasOnlySubstanceUnits(false);
       assertEquals( false, s.hasRequiredAttributes() );
       s.setBoundaryCondition(false);
       assertEquals( false, s.hasRequiredAttributes() );
       s.setConstant(false);
       assertEquals( true, s.hasRequiredAttributes() );
       s = null;
 }
 public void test_Model_addSpecies5()
 {
     Model m = new  Model(2,2);
       Species s = new  Species(2,2);
       s.setId( "s");
       s.setCompartment( "c");
       Species s1 = new  Species(2,2);
       s1.setId( "s");
       s1.setCompartment( "c");
       int i = m.addSpecies(s);
       assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
       assertTrue( m.getNumSpecies() == 1 );
       i = m.addSpecies(s1);
       assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID );
       assertTrue( m.getNumSpecies() == 1 );
       s = null;
       s1 = null;
       m = null;
 }
示例#10
0
 public void test_Model_addSpecies2()
 {
     Model m = new  Model(2,2);
       Species s = new  Species(2,1);
       s.setId( "s");
       s.setCompartment( "c");
       int i = m.addSpecies(s);
       assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH );
       assertTrue( m.getNumSpecies() == 0 );
       s = null;
       m = null;
 }
示例#11
0
 public void test_SBMLConvert_convertToL1_Species_Concentration()
 {
     SBMLDocument d = new  SBMLDocument(2,1);
       Model m = d.createModel();
       string sid =  "C";
       Compartment c = new  Compartment(2,1);
       Species s = new  Species(2,1);
       c.setId(sid);
       c.setSize(1.2);
       m.addCompartment(c);
       s.setId( "s"  );
       s.setCompartment(sid);
       s.setInitialConcentration(2.34);
       m.addSpecies(s);
       assertTrue( d.setLevelAndVersion(1,2,true) == true );
       Species s1 = m.getSpecies(0);
       assertTrue( s1 != null );
       assertTrue((  "C" == s1.getCompartment() ));
       assertTrue( m.getCompartment( "C").getSize() == 1.2 );
       assertTrue( s1.getInitialConcentration() == 2.34 );
       assertTrue( s1.isSetInitialConcentration() == true );
       d = null;
 }
示例#12
0
 public void test_SBMLConvert_convertToL1_Species_Amount()
 {
     SBMLDocument d = new  SBMLDocument(2,1);
       Model m = d.createModel();
       string sid =  "C";
       Compartment c = new  Compartment(2,4);
       Species s = new  Species(2,4);
       c.setId(sid);
       m.addCompartment(c);
       s.setCompartment(sid);
       s.setInitialAmount(2.34);
       m.addSpecies(s);
       assertTrue( d.setLevelAndVersion(1,2,true) == true );
       assertTrue( s.getInitialAmount() == 2.34 );
       d = null;
 }
示例#13
0
 public void test_Species_copyConstructor()
 {
     Species o1 = new Species(2,4);
       o1.setId("c");
       o1.setSpeciesType("c1");
       assertTrue( o1.getId() ==  "c" );
       assertEquals(o1.getSpeciesType(), "c1");
       Species o2 = new Species(o1);
       assertTrue( o2.getId() ==  "c" );
       assertEquals(o2.getSpeciesType(), "c1");
       assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() );
       o2 = null;
       o1 = null;
 }
示例#14
0
 public void test_ListOf_copyConstructor()
 {
     ListOf o1 = new ListOf();
       Species s = new Species(2,1);
       s.setId("species_1");
       o1.append(s);
       s = null;
       ListOf o2 = new ListOf(o1);
       assertTrue( o2.size() == 1 );
       assertTrue( ((Species) o2.get(0)).getId() ==  "species_1" );
       assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() );
       o2 = null;
       o1 = null;
 }
示例#15
0
 public void test_Species()
 {
     Species s = new Species(2,4);
       assertEquals( true, s.hasRequiredElements() );
       s = null;
 }
示例#16
0
 public void test_Model_getSpeciesById()
 {
     Species s1 = new  Species(2,4);
       Species s2 = new  Species(2,4);
       s1.setId( "Glucose"     );
       s2.setId( "Glucose_6_P" );
       s1.setCompartment( "c");
       s2.setCompartment( "c");
       M.addSpecies(s1);
       M.addSpecies(s2);
       assertTrue( M.getNumSpecies() == 2 );
       assertTrue( M.getSpecies( "Glucose"    ) != s1 );
       assertTrue( M.getSpecies( "Glucose_6_P") != s2 );
       assertTrue( M.getSpecies( "Glucose2"   ) == null );
 }
示例#17
0
 public void test_Model_getSpecies()
 {
     Species s1 = new  Species(2,4);
       Species s2 = new  Species(2,4);
       s1.setId( "Glucose"     );
       s2.setId( "Glucose_6_P" );
       s1.setCompartment( "c");
       s2.setCompartment( "c");
       M.addSpecies(s1);
       M.addSpecies(s2);
       assertTrue( M.getNumSpecies() == 2 );
       s1 = M.getSpecies(0);
       s2 = M.getSpecies(1);
       assertTrue((  "Glucose"      == s1.getId() ));
       assertTrue((  "Glucose_6_P"  == s2.getId() ));
 }
示例#18
0
 /**
    * Adds the given species as a reactant with the given stoichiometry
    *
    * @param species the species to be added as reactant
    *
    * @param stoichiometry an optional parameter specifying the
    *        stoichiometry of the product (defaulting to 1)
    *
    * @param id an optional id to be given to the species reference that will
    *        be created. (defaulting to empty string, i.e. not set)
    *
    * @param constant an attribute specifying whether the species reference is
    *        constant or not (defaulting to true)
    *
    *
  * @return integer value indicating success/failure of the
  * function.  @if clike The value is drawn from the
  * enumeration #OperationReturnValues_t. @endif The possible values
  * returned by this function are:
  * @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
    * @li @link libsbml#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink
    * @li @link libsbml#LIBSBML_INVALID_ATTRIBUTE_VALUE LIBSBML_INVALID_ATTRIBUTE_VALUE@endlink
    * @li @link libsbml#LIBSBML_DUPLICATE_OBJECT_ID LIBSBML_DUPLICATE_OBJECT_ID@endlink
    *
    *
  * @note This method should be used with some caution.  The fact that this
  * method @em copies the object passed to it means that the caller will be
  * left holding a physically different object instance than the one contained
  * inside this object.  Changes made to the original object instance (such as
  * resetting attribute values) will <em>not affect the instance in this
  * object</em>.  In addition, the caller should make sure to free the
  * original object if it is no longer being used, or else a memory leak will
  * result.  Please see other methods on this class (particularly a
  * corresponding method whose name begins with the word <code>create</code>)
  * for alternatives that do not lead to these issues.
  *
  *
    *
    * @note the Species object itself is NOT added to the model
    *
    * @see createProduct()
    */
 public int addReactant(Species species, double stoichiometry)
 {
     int ret = libsbmlPINVOKE.Reaction_addReactant__SWIG_3(swigCPtr, Species.getCPtr(species), stoichiometry);
     return ret;
 }
示例#19
0
 /**
    * Adds the given species as a reactant with the given stoichiometry
    *
    * @param species the species to be added as reactant
    *
    * @param stoichiometry an optional parameter specifying the
    *        stoichiometry of the product (defaulting to 1)
    *
    * @param id an optional id to be given to the species reference that will
    *        be created. (defaulting to empty string, i.e. not set)
    *
    * @param constant an attribute specifying whether the species reference is
    *        constant or not (defaulting to true)
    *
    *
  * @return integer value indicating success/failure of the
  * function.  @if clike The value is drawn from the
  * enumeration #OperationReturnValues_t. @endif The possible values
  * returned by this function are:
  * @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
    * @li @link libsbml#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink
    * @li @link libsbml#LIBSBML_INVALID_ATTRIBUTE_VALUE LIBSBML_INVALID_ATTRIBUTE_VALUE@endlink
    * @li @link libsbml#LIBSBML_DUPLICATE_OBJECT_ID LIBSBML_DUPLICATE_OBJECT_ID@endlink
    *
    *
  * @note This method should be used with some caution.  The fact that this
  * method @em copies the object passed to it means that the caller will be
  * left holding a physically different object instance than the one contained
  * inside this object.  Changes made to the original object instance (such as
  * resetting attribute values) will <em>not affect the instance in this
  * object</em>.  In addition, the caller should make sure to free the
  * original object if it is no longer being used, or else a memory leak will
  * result.  Please see other methods on this class (particularly a
  * corresponding method whose name begins with the word <code>create</code>)
  * for alternatives that do not lead to these issues.
  *
  *
    *
    * @note the Species object itself is NOT added to the model
    *
    * @see createProduct()
    */
 public int addReactant(Species species)
 {
     int ret = libsbmlPINVOKE.Reaction_addReactant__SWIG_4(swigCPtr, Species.getCPtr(species));
     return ret;
 }
示例#20
0
 /**
    * Adds a copy of the given Species object to this Model.
    *
    * @param s the Species object to add
    *
    * @return integer value indicating success/failure of the
    * function.  The possible values
    * returned by this function are:
    * @li @link libsbmlcs.libsbml.LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS @endlink
    * @li @link libsbmlcs.libsbml.LIBSBML_LEVEL_MISMATCH LIBSBML_LEVEL_MISMATCH @endlink
    * @li @link libsbmlcs.libsbml.LIBSBML_VERSION_MISMATCH LIBSBML_VERSION_MISMATCH @endlink
    * @li @link libsbmlcs.libsbml.LIBSBML_DUPLICATE_OBJECT_ID LIBSBML_DUPLICATE_OBJECT_ID @endlink
    * @li @link libsbmlcs.libsbml.LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT @endlink
    * @li @link libsbmlcs.libsbml.LIBSBML_OPERATION_FAILED LIBSBML_OPERATION_FAILED @endlink
    *
    * *
  * @note This method should be used with some caution.  The fact that this
  * method @em copies the object passed to it means that the caller will be
  * left holding a physically different object instance than the one contained
  * inside this object.  Changes made to the original object instance (such as
  * resetting attribute values) will <em>not affect the instance in this
  * object</em>.  In addition, the caller should make sure to free the
  * original object if it is no longer being used, or else a memory leak will
  * result.  Please see other methods on this class (particularly a
  * corresponding method whose name begins with the word <code>create</code>)
  * for alternatives that do not lead to these issues.
  *
  *
    *
    * @see createSpecies()
    */
 public int addSpecies(Species s)
 {
     int ret = libsbmlPINVOKE.Model_addSpecies(swigCPtr, Species.getCPtr(s));
     return ret;
 }
示例#21
0
 public void test_Model_addSpecies3()
 {
     Model m = new  Model(2,2);
       Species s = new  Species(1,2);
       s.setId( "s");
       s.setCompartment( "c");
       s.setInitialAmount(2);
       int i = m.addSpecies(s);
       assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH );
       assertTrue( m.getNumSpecies() == 0 );
       s = null;
       m = null;
 }
 public void test_internal_consistency_check_99916_reaction()
 {
     SBMLDocument d = new SBMLDocument(2,4);
       long errors;
       Species s = new Species(2,4);
       d.setLevelAndVersion(1,2,false);
       Model m = d.createModel();
       Compartment c = m.createCompartment();
       c.setId("c");
       Reaction r = m.createReaction();
       r.setId("r");
       SpeciesReference sr = r.createReactant();
       s.setId("s");
       s.setCompartment("c");
       s.setConstant(true);
       sr.setSpecies("s");
       m.addSpecies(s);
       errors = d.checkInternalConsistency();
       assertTrue( errors == 0 );
       d = null;
 }
示例#23
0
 public void test_L3_Species_createWithNS()
 {
     XMLNamespaces xmlns = new  XMLNamespaces();
       xmlns.add( "http://www.sbml.org", "testsbml");
       SBMLNamespaces sbmlns = new  SBMLNamespaces(3,1);
       sbmlns.addNamespaces(xmlns);
       Species s = new  Species(sbmlns);
       assertTrue( s.getTypeCode() == libsbml.SBML_SPECIES );
       assertTrue( s.getMetaId() == "" );
       assertTrue( s.getNotes() == null );
       assertTrue( s.getAnnotation() == null );
       assertTrue( s.getLevel() == 3 );
       assertTrue( s.getVersion() == 1 );
       assertTrue( s.getNamespaces() != null );
       assertTrue( s.getNamespaces().getLength() == 2 );
       assertTrue( s.getId() == "" );
       assertTrue( s.getName() == "" );
       assertTrue( s.getCompartment() == "" );
       assertEquals( true, isnan(s.getInitialAmount()) );
       assertEquals( true, isnan(s.getInitialConcentration()) );
       assertTrue( s.getSubstanceUnits() == "" );
       assertTrue( s.getHasOnlySubstanceUnits() == false );
       assertTrue( s.getBoundaryCondition() == false );
       assertTrue( s.getConstant() == false );
       assertTrue( s.getConversionFactor() == "" );
       assertEquals( false, s.isSetId() );
       assertEquals( false, s.isSetName() );
       assertEquals( false, s.isSetCompartment() );
       assertEquals( false, s.isSetInitialAmount() );
       assertEquals( false, s.isSetInitialConcentration() );
       assertEquals( false, s.isSetSubstanceUnits() );
       assertEquals( false, s.isSetHasOnlySubstanceUnits() );
       assertEquals( false, s.isSetBoundaryCondition() );
       assertEquals( false, s.isSetConstant() );
       assertEquals( false, s.isSetConversionFactor() );
       s = null;
 }
示例#24
0
 public void tearDown()
 {
     S = null;
 }
 public void test_internal_consistency_check_99916_rule()
 {
     SBMLDocument d = new SBMLDocument(2,4);
       long errors;
       Species s = new Species(2,4);
       d.setLevelAndVersion(1,2,false);
       Model m = d.createModel();
       Compartment c = m.createCompartment();
       c.setId("c");
       s.setId("s");
       s.setCompartment("c");
       s.setConstant(true);
       m.addSpecies(s);
       Rule r = m.createAssignmentRule();
       r.setVariable("s");
       r.setFormula("2");
       errors = d.checkInternalConsistency();
       assertTrue( errors == 2 );
       d = null;
 }
示例#26
0
        internal static HandleRef getCPtrAndDisown(Species obj)
        {
            HandleRef ptr = new HandleRef(null, IntPtr.Zero);

            if (obj != null)
            {
            ptr             = obj.swigCPtr;
            obj.swigCMemOwn = false;
            }

            return ptr;
        }
示例#27
0
 internal static HandleRef getCPtr(Species obj)
 {
     return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr;
 }
 public void test_internal_consistency_check_99919()
 {
     SBMLDocument d = new SBMLDocument(2,4);
       long errors;
       Species s = new Species(2,4);
       d.setLevelAndVersion(1,2,false);
       Model m = d.createModel();
       Compartment c = m.createCompartment();
       c.setId("c");
       s.setId("s");
       s.setCompartment("c");
       s.setHasOnlySubstanceUnits(true);
       m.addSpecies(s);
       errors = d.checkInternalConsistency();
       assertTrue( errors == 0 );
       d = null;
 }
示例#29
0
 /**
    * Copy constructor; creates a copy of this Species object.
    *
    * @param orig the object to copy.
    */
 public Species(Species orig)
     : this(libsbmlPINVOKE.new_Species__SWIG_2(Species.getCPtr(orig)), true)
 {
     if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
 }
示例#30
0
 /**
    * Adds the given species as a modifier to this reaction
    *
    * @param species the species to be added as modifier
    *
    * @param id an optional id to be given to the species reference that will
    *        be created. (defaulting to empty string, i.e. not set)
    *
    *
  * @return integer value indicating success/failure of the
  * function.  @if clike The value is drawn from the
  * enumeration #OperationReturnValues_t. @endif The possible values
  * returned by this function are:
  * @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
    * @li @link libsbml#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink
    * @li @link libsbml#LIBSBML_INVALID_ATTRIBUTE_VALUE LIBSBML_INVALID_ATTRIBUTE_VALUE@endlink
    * @li @link libsbml#LIBSBML_DUPLICATE_OBJECT_ID LIBSBML_DUPLICATE_OBJECT_ID@endlink
    *
    *
  * @note This method should be used with some caution.  The fact that this
  * method @em copies the object passed to it means that the caller will be
  * left holding a physically different object instance than the one contained
  * inside this object.  Changes made to the original object instance (such as
  * resetting attribute values) will <em>not affect the instance in this
  * object</em>.  In addition, the caller should make sure to free the
  * original object if it is no longer being used, or else a memory leak will
  * result.  Please see other methods on this class (particularly a
  * corresponding method whose name begins with the word <code>create</code>)
  * for alternatives that do not lead to these issues.
  *
  *
    *
    * @note the Species object itself is NOT added to the model
    *
    * @see createModifier()
    */
 public int addModifier(Species species)
 {
     int ret = libsbmlPINVOKE.Reaction_addModifier__SWIG_2(swigCPtr, Species.getCPtr(species));
     return ret;
 }