public void test_FunctionDefinition_createWith()
{
ASTNode math = libsbml.parseFormula("lambda(x, x^3)");
FunctionDefinition fd = new FunctionDefinition(2,4);
fd.setId( "pow3");
fd.setMath(math);
ASTNode math1;
string formula;
assertTrue( fd.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION );
assertTrue( fd.getMetaId() == "" );
assertTrue( fd.getNotes() == null );
assertTrue( fd.getAnnotation() == null );
assertTrue( fd.getName() == "" );
math1 = fd.getMath();
assertTrue( math1 != null );
formula = libsbml.formulaToString(math1);
assertTrue( formula != null );
assertTrue(( "lambda(x, x^3)" == formula ));
assertTrue( fd.getMath() != math );
assertEquals( true, fd.isSetMath() );
assertTrue(( "pow3" == fd.getId() ));
assertEquals( true, fd.isSetId() );
math = null;
fd = null;
}
public void test_Model_addFunctionDefinition4()
{
Model m = new Model(2,2);
FunctionDefinition fd = new FunctionDefinition(2,2);
fd.setId( "fd");
fd.setMath(libsbml.parseFormula("fd"));
FunctionDefinition fd1 = new FunctionDefinition(2,2);
fd1.setId( "fd");
fd1.setMath(libsbml.parseFormula("fd"));
int i = m.addFunctionDefinition(fd);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( m.getNumFunctionDefinitions() == 1 );
i = m.addFunctionDefinition(fd1);
assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID );
assertTrue( m.getNumFunctionDefinitions() == 1 );
fd = null;
fd1 = null;
m = null;
}
public void test_Model_addFunctionDefinition2()
{
Model m = new Model(2,2);
FunctionDefinition fd = new FunctionDefinition(2,1);
fd.setId( "fd");
fd.setMath(libsbml.parseFormula("fd"));
int i = m.addFunctionDefinition(fd);
assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH );
assertTrue( m.getNumFunctionDefinitions() == 0 );
fd = null;
m = null;
}
public void test_WriteSBML_FunctionDefinition_withSBO()
{
string expected = "<functionDefinition id=\"pow3\" sboTerm=\"SBO:0000064\">\n" +
" <math xmlns=\"http://www.w3.org/1998/Math/MathML\">\n" +
" <lambda>\n" +
" <bvar>\n" +
" <ci> x </ci>\n" +
" </bvar>\n" +
" <apply>\n" +
" <power/>\n" +
" <ci> x </ci>\n" +
" <cn type=\"integer\"> 3 </cn>\n" +
" </apply>\n" +
" </lambda>\n" +
" </math>\n" +
"</functionDefinition>";
FunctionDefinition fd = new FunctionDefinition ( 2,4 );
fd.setId("pow3");
fd.setMath(libsbml.parseFormula("lambda(x, x^3)"));
fd.setSBOTerm(64);
assertEquals( true, equals(expected,fd.toSBML()) );
}
public void test_FunctionDefinition_copyConstructor()
{
FunctionDefinition o1 = new FunctionDefinition(2,4);
o1.setId("c");
assertTrue( o1.getId() == "c" );
ASTNode node = new ASTNode(libsbml.AST_CONSTANT_PI);
o1.setMath(node);
node = null;
assertTrue( o1.getMath() != null );
FunctionDefinition o2 = new FunctionDefinition(o1);
assertTrue( o2.getId() == "c" );
assertTrue( o2.getMath() != null );
assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() );
o2 = null;
o1 = null;
}
public void test_internal_consistency_check_99911_fd()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Model m = d.createModel();
FunctionDefinition fd = new FunctionDefinition(2,4);
d.setLevelAndVersion(2,1,false);
fd.setId("fd");
fd.setSBOTerm(2);
m.addFunctionDefinition(fd);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_Model_getFunctionDefinitionById()
{
FunctionDefinition fd1 = new FunctionDefinition(2,4);
FunctionDefinition fd2 = new FunctionDefinition(2,4);
fd1.setId( "sin" );
fd2.setId( "cos" );
fd1.setMath(libsbml.parseFormula("2"));
fd2.setMath(libsbml.parseFormula("2"));
M.addFunctionDefinition(fd1);
M.addFunctionDefinition(fd2);
assertTrue( M.getNumFunctionDefinitions() == 2 );
assertNotEquals(M.getFunctionDefinition( "sin" ),fd1);
assertNotEquals(M.getFunctionDefinition( "cos" ),fd2);
assertEquals(M.getFunctionDefinition( "tan" ),null);
}
public void test_Model_add_get_FunctionDefinitions()
{
FunctionDefinition fd1 = new FunctionDefinition(2,4);
FunctionDefinition fd2 = new FunctionDefinition(2,4);
fd1.setId( "fd1");
fd2.setId( "fd2");
fd1.setMath(libsbml.parseFormula("2"));
fd2.setMath(libsbml.parseFormula("2"));
M.addFunctionDefinition(fd1);
M.addFunctionDefinition(fd2);
assertTrue( M.getNumFunctionDefinitions() == 2 );
assertNotEquals(M.getFunctionDefinition(0),fd1);
assertNotEquals(M.getFunctionDefinition(1),fd2);
assertEquals(M.getFunctionDefinition(2),null);
}
public void test_FunctionDefinition_parent_add()
{
FunctionDefinition fd = new FunctionDefinition(2,4);
Model m = new Model(2,4);
fd.setId("fd");
fd.setMath(libsbml.parseFormula("l"));
m.addFunctionDefinition(fd);
fd = null;
ListOf lo = m.getListOfFunctionDefinitions();
assertTrue( lo == m.getFunctionDefinition(0).getParentSBMLObject() );
assertTrue( m == lo.getParentSBMLObject() );
}
public void test_FunctionDefinition()
{
FunctionDefinition fd = new FunctionDefinition(2,4);
assertEquals( false, (fd.hasRequiredAttributes()) );
fd.setId("fd");
assertEquals( true, fd.hasRequiredAttributes() );
fd = null;
}
public void test_FunctionDefinition_ancestor_add()
{
FunctionDefinition fd = new FunctionDefinition(2,4);
Model m = new Model(2,4);
fd.setId("fd");
fd.setMath(libsbml.parseFormula("l"));
m.addFunctionDefinition(fd);
fd = null;
ListOf lo = m.getListOfFunctionDefinitions();
FunctionDefinition obj = m.getFunctionDefinition(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
}