public static void doIBDCSFast()
{
Program.addLog("data: " + data_files_folder);
Program.addLog("ibd: " + out_folder);
if (!Directory.Exists(data_files_folder) || !Directory.Exists(out_folder))
{
Program.addLog("Required data and ibd directories doesn't exist!");
return;
}
string[] files = Directory.GetFiles(data_files_folder);
int total = files.Length;
foreach (string file in files)
{
ExecTask task = new ExecTask(data_files_folder, out_folder, snp_threshold, base_pairs_threshold);
task.processFile(file);
}
}
static void Main(string[] args)
{
//DEBUG
//data_files_folder = @"D:\Genetics\Ancient-DNA\data\";
//out_folder = @"D:\Genetics\Ancient-DNA\ibd\";
Console.WriteLine("Genetic Genealogy Tools - Felix Chandrakumar <*****@*****.**>");
Console.WriteLine();
//Console.WriteLine("Syntax:");
//Console.WriteLine("\tibdcsfast.exe <base_pairs_threshold> <snps_threshold>");
//Console.WriteLine("\r\nE.g., ibdcsfast.exe 1000000 150");
//Console.WriteLine("data and ibd folder must exist.");
if (args.Length == 2)
{
base_pairs_threshold = int.Parse(args[0]);
snp_threshold = int.Parse(args[1]);
}
Console.WriteLine("data: " + data_files_folder);
Console.WriteLine("ibd: " + out_folder);
if (!Directory.Exists(data_files_folder) || !Directory.Exists(out_folder))
{
Console.WriteLine("Required data and ibd directories doesn't exist!");
return;
}
string[] files = Directory.GetFiles(data_files_folder);
int total = files.Length;
foreach (string file in files)
{
ExecTask task = new ExecTask(data_files_folder, out_folder, snp_threshold, base_pairs_threshold);
task.processFile(file);
}
}