public static bool ProcessOneFile(gdcm.Anonymizer ano, string filename, string outfilename)
{
Reader reader = new Reader();
reader.SetFileName(filename);
bool ret = reader.Read();
if (!ret)
{
return(false);
}
// Pass in the file:
ano.SetFile(reader.GetFile());
// First step, let's protect all Patient information as per
// PS 3.15 / E.1 / Basic Application Level Confidentiality Profile
if (!ano.BasicApplicationLevelConfidentialityProfile())
{
return(false);
}
// Now let's pass in all Clinical Trial fields
// PS 3.3 - 2008 / C.7.1.3 Clinical Trial Subject Module
/*
* Clinical Trial Sponsor Name (0012,0010) 1 The name of the clinical trial sponsor. See C.7.1.3.1.1.
* Clinical Trial Protocol ID (0012,0020) 1 Identifier for the noted protocol. See C.7.1.3.1.2.
* Clinical Trial Protocol Name (0012,0021) 2 The name of the clinical trial protocol. See C.7.1.3.1.3.
* Clinical Trial Site ID (0012,0030) 2 The identifier of the site responsible for submitting clinical trial data. See C.7.1.3.1.4.
* Clinical Trial Site Name (0012,0031) 2 Name of the site responsible for submitting clinical trial data. See C.7.1.3.1.5
* Clinical Trial Subject ID (0012,0040) 1C The assigned identifier for the clinical trial subject. See C.7.1.3.1.6. Shall be present if Clinical Trial Subject Reading ID (0012,0042) is absent. May be present otherwise.
* Clinical Trial Subject Reading ID (0012,0042) 1C Identifies the subject for blinded evaluations. Shall be present if Clinical Trial Subject ID (0012,0040) is absent. May be present otherwise. See C.7.1.3.1.7.
*/
ano.Replace(new gdcm.Tag(0x0012, 0x0010), "MySponsorName");
ano.Replace(new gdcm.Tag(0x0012, 0x0020), "MyProtocolID");
ano.Replace(new gdcm.Tag(0x0012, 0x0021), "MyProtocolName");
ano.Replace(new gdcm.Tag(0x0012, 0x0030), "MySiteId");
ano.Replace(new gdcm.Tag(0x0012, 0x0031), "MySiteName");
ano.Replace(new gdcm.Tag(0x0012, 0x0040), "MySponsorId");
ano.Replace(new gdcm.Tag(0x0012, 0x0050), "MyTPId");
ano.Replace(new gdcm.Tag(0x0012, 0x0051), "MyTPDescription");
// The following two are not required as they are guaranteed to be filled in by the
// Basic Application Level Confidentiality Profile. Only override if you understand what
// you are doing
//ano.Replace( new gdcm.Tag(0x0012,0x0062), "YES");
//ano.Replace( new gdcm.Tag(0x0012,0x0063), "My Super Duper Anonymization Overload");
// We might be generating a subdirectory. Let's make sure the subdir exist:
gdcm.Filename fn = new gdcm.Filename(outfilename);
string subdir = fn.GetPath();
if (!gdcm.PosixEmulation.MakeDirectory(subdir))
{
return(false);
}
gdcm.FileMetaInformation fmi = ano.GetFile().GetHeader();
// The following three lines make sure to regenerate any value:
fmi.Remove(new gdcm.Tag(0x0002, 0x0012));
fmi.Remove(new gdcm.Tag(0x0002, 0x0013));
fmi.Remove(new gdcm.Tag(0x0002, 0x0016));
Writer writer = new Writer();
writer.SetFileName(outfilename);
writer.SetFile(ano.GetFile());
ret = writer.Write();
if (!ret)
{
return(false);
}
return(true);
}
public static bool ProcessOneFile( gdcm.Anonymizer ano , string filename, string outfilename )
{
Reader reader = new Reader();
reader.SetFileName( filename );
bool ret = reader.Read();
if( !ret )
{
return false;
}
// Pass in the file:
ano.SetFile( reader.GetFile() );
// First step, let's protect all Patient information as per
// PS 3.15 / E.1 / Basic Application Level Confidentiality Profile
if( !ano.BasicApplicationLevelConfidentialityProfile() )
{
return false;
}
// Now let's pass in all Clinical Trial fields
// PS 3.3 - 2008 / C.7.1.3 Clinical Trial Subject Module
/*
Clinical Trial Sponsor Name (0012,0010) 1 The name of the clinical trial sponsor. See C.7.1.3.1.1.
Clinical Trial Protocol ID (0012,0020) 1 Identifier for the noted protocol. See C.7.1.3.1.2.
Clinical Trial Protocol Name (0012,0021) 2 The name of the clinical trial protocol. See C.7.1.3.1.3.
Clinical Trial Site ID (0012,0030) 2 The identifier of the site responsible for submitting clinical trial data. See C.7.1.3.1.4.
Clinical Trial Site Name (0012,0031) 2 Name of the site responsible for submitting clinical trial data. See C.7.1.3.1.5
Clinical Trial Subject ID (0012,0040) 1C The assigned identifier for the clinical trial subject. See C.7.1.3.1.6. Shall be present if Clinical Trial Subject Reading ID (0012,0042) is absent. May be present otherwise.
Clinical Trial Subject Reading ID (0012,0042) 1C Identifies the subject for blinded evaluations. Shall be present if Clinical Trial Subject ID (0012,0040) is absent. May be present otherwise. See C.7.1.3.1.7.
*/
ano.Replace( new gdcm.Tag(0x0012,0x0010), "MySponsorName");
ano.Replace( new gdcm.Tag(0x0012,0x0020), "MyProtocolID");
ano.Replace( new gdcm.Tag(0x0012,0x0021), "MyProtocolName");
ano.Replace( new gdcm.Tag(0x0012,0x0030), "MySiteId");
ano.Replace( new gdcm.Tag(0x0012,0x0031), "MySiteName");
ano.Replace( new gdcm.Tag(0x0012,0x0040), "MySponsorId");
ano.Replace( new gdcm.Tag(0x0012,0x0050), "MyTPId");
ano.Replace( new gdcm.Tag(0x0012,0x0051), "MyTPDescription");
// The following two are not required as they are guaranteed to be filled in by the
// Basic Application Level Confidentiality Profile. Only override if you understand what
// you are doing
//ano.Replace( new gdcm.Tag(0x0012,0x0062), "YES");
//ano.Replace( new gdcm.Tag(0x0012,0x0063), "My Super Duper Anonymization Overload");
// We might be generating a subdirectory. Let's make sure the subdir exist:
gdcm.Filename fn = new gdcm.Filename( outfilename );
string subdir = fn.GetPath();
if( !gdcm.PosixEmulation.MakeDirectory( subdir ) )
{
return false;
}
gdcm.FileMetaInformation fmi = ano.GetFile().GetHeader();
// The following three lines make sure to regenerate any value:
fmi.Remove( new gdcm.Tag(0x0002,0x0012) );
fmi.Remove( new gdcm.Tag(0x0002,0x0013) );
fmi.Remove( new gdcm.Tag(0x0002,0x0016) );
Writer writer = new Writer();
writer.SetFileName( outfilename );
writer.SetFile( ano.GetFile() );
ret = writer.Write();
if( !ret )
{
return false;
}
return true;
}
