private Job BuildJob(Attempt attempt, Recipe recipe, DbBroker dbBroker)
{
var log = Log.GetLogger();
try
{
var jb = new JobBuilder(new ValueComparer(), dbBroker);
var job = jb.Build(recipe, attempt);
return(job);
}
catch (JobBuilder.StudyNotFoundException ex)
{
log.Info($"{ex.Message} Accession: [{attempt.CurrentAccession}]");
return(null);
}
catch (DirectoryNotFoundException ex)
{
if (ex.Message.ToLower().Contains("workable series were found"))
{
log.Info($"{ex.Message} Accession: [{attempt.CurrentAccession}]");
}
else
{
throw;
}
}
catch (Exception ex)
{
log.Info($"{ex.Message} Attempt [{attempt.Id}] failed during build.");
@attempt.Comment = ex.Message;
}
return(null);
}
private void CleanupDatabase()
{
var log = Log.GetLogger();
var cfg = CapiConfig.GetConfig();
if (cfg == null)
{
throw new ApplicationException("Unable to find config file.");
}
var dbBroker = new DbBroker(cfg.AgentDbConnectionString);
if (dbBroker.Database.EnsureCreated())
{
log.Info("Database not found, so it has been created.");
}
else
{
log.Info("Database found.");
}
if (!dbBroker.Database.CanConnect())
{
log.Error("Could not connect to database using string: " + cfg.AgentDbConnectionString);
}
else
{
log.Info("DB Connection established");
}
try
{
log.Info("DB Connection good? " + dbBroker.Database.CanConnect());
var failedCases = dbBroker.GetCaseByStatus("Processing");
foreach (var c in failedCases)
{
var tmp = c;
tmp.Status = "Pending";
dbBroker.Attempts.Update(tmp);
dbBroker.SaveChanges();
}
var failedJobs = dbBroker.GetJobByStatus("Processing");
foreach (var j in failedJobs)
{
var tmp = j;
tmp.Status = "Failed";
dbBroker.Jobs.Update(tmp);
dbBroker.SaveChanges();
}
}
catch (Exception e)
{
log.Error("Error while accesing database. If this is due to an incompatible schema, maybe try wiping the database and starting again?");
log.Error(e);
}
}
/// <summary>
/// Constructor
/// </summary>
/// <param name="dicomServices"></param>
/// <param name="imgProcFactory">ImageProcessing Factory</param>
/// <param name="valueComparer"></param>
/// <param name="fileSystem">Provides extra filesystem capabilities</param>
/// <param name="processBuilder">Builds exe or java processes and executes them</param>
/// <param name="capiConfig">CAPI configuration</param>
/// <param name="log">Log4Net logger</param>
/// <param name="context">Agent Repository (DbContext) to communicate data with database</param>
public JobBuilder(IValueComparer valueComparer, DbBroker context)
{
_valueComparer = valueComparer;
_log = Log.GetLogger();
_context = context;
}