static public ProteinPositionAndLength GetInstance(ProteinPosition proteinPosition, int length) { ProteinPositionAndLength aProteinPositionAndLength = new ProteinPositionAndLength(); aProteinPositionAndLength.ProteinPosition = proteinPosition; aProteinPositionAndLength.Length = length; return(aProteinPositionAndLength); }
static public ProteinPositionPlus GetInstance(ProteinPosition proteinPosition, int nucleotide1Index, NucleotideIndexReference nucleotideIndexReference) { ProteinPositionPlus aProteinPositionPlus = new ProteinPositionPlus(); aProteinPositionPlus.ProteinPosition = proteinPosition; aProteinPositionPlus.Nucleotide1Index = nucleotide1Index; aProteinPositionPlus.NucleotideIndexReference = nucleotideIndexReference; return(aProteinPositionPlus); }
// string sProtein = proteinAndOffset.Substring(0,proteinAndOffset.LastIndexOf("+")); //!!!could raise error //int iAABase1 = int.Parse(proteinPositionStart.Substring(proteinPositionStart.LastIndexOf("+"))); //!!!could raise error //string.Format("{0}+{1}", sProtein, iBase1AminoAcidCount); public int CompareTo(object y) { ProteinPosition yProteinPosition = (ProteinPosition)y; //!!!raise error if (AminoAcidBase1 != yProteinPosition.AminoAcidBase1) { return(AminoAcidBase1.CompareTo(yProteinPosition.AminoAcidBase1)); } return(Protein.CompareTo(yProteinPosition.Protein)); }