static public ProteinPositionAndLength GetInstance(ProteinPosition proteinPosition, int length)
{
ProteinPositionAndLength aProteinPositionAndLength = new ProteinPositionAndLength();
aProteinPositionAndLength.ProteinPosition = proteinPosition;
aProteinPositionAndLength.Length = length;
return(aProteinPositionAndLength);
}
static public ProteinPositionPlus GetInstance(ProteinPosition proteinPosition, int nucleotide1Index, NucleotideIndexReference nucleotideIndexReference)
{
ProteinPositionPlus aProteinPositionPlus = new ProteinPositionPlus();
aProteinPositionPlus.ProteinPosition = proteinPosition;
aProteinPositionPlus.Nucleotide1Index = nucleotide1Index;
aProteinPositionPlus.NucleotideIndexReference = nucleotideIndexReference;
return(aProteinPositionPlus);
}
// string sProtein = proteinAndOffset.Substring(0,proteinAndOffset.LastIndexOf("+")); //!!!could raise error
//int iAABase1 = int.Parse(proteinPositionStart.Substring(proteinPositionStart.LastIndexOf("+"))); //!!!could raise error
//string.Format("{0}+{1}", sProtein, iBase1AminoAcidCount);
public int CompareTo(object y)
{
ProteinPosition yProteinPosition = (ProteinPosition)y; //!!!raise error
if (AminoAcidBase1 != yProteinPosition.AminoAcidBase1)
{
return(AminoAcidBase1.CompareTo(yProteinPosition.AminoAcidBase1));
}
return(Protein.CompareTo(yProteinPosition.Protein));
}
