internal static QmrrlModelMissingParameters GetInstance(ModelLikelihoodFactories modelLikelihoodFactories, QmrrPartialModel qmrrPartialModel, BestSoFar <double, TrueCollection> bestSoFar)
{
QmrrlModelMissingParameters aQmrrlModelMissingParameters = new QmrrlModelMissingParameters();
aQmrrlModelMissingParameters.QmrrPartialModel = qmrrPartialModel;
aQmrrlModelMissingParameters.TrueCollection = bestSoFar.Champ;
aQmrrlModelMissingParameters.ModelLikelihoodFactories = modelLikelihoodFactories;
aQmrrlModelMissingParameters.LogLikelihoodOfCompleteModelConditionedOnKnownHlas = modelLikelihoodFactories.MissingParametersDelegateFactory(qmrrPartialModel, bestSoFar.Champ);
return(aQmrrlModelMissingParameters);
}
public static QmrrlModelMissingParametersCollection GetInstance(ModelLikelihoodFactories modelLikelihoodFactories, QmrrPartialModelCollection qmrrPartialModelCollection, Dictionary <string, BestSoFar <double, TrueCollection> > PeptideToBestHlaAssignmentSoFar)
{
QmrrlModelMissingParametersCollection aQmrrlModelMissingParametersCollection = new QmrrlModelMissingParametersCollection();
foreach (QmrrPartialModel qmrrPartialModel in qmrrPartialModelCollection)
{
QmrrlModelMissingParameters aQmrrlModelMissingParameters = QmrrlModelMissingParameters.GetInstance(modelLikelihoodFactories, qmrrPartialModel, PeptideToBestHlaAssignmentSoFar[qmrrPartialModel.Peptide]);
aQmrrlModelMissingParametersCollection.Collection.Add(aQmrrlModelMissingParameters);
}
aQmrrlModelMissingParametersCollection.GridSearch = GridSearch.GetInstance("Grid");
return(aQmrrlModelMissingParametersCollection);
}