private void RunWorkflowButton_Click(object sender, RoutedEventArgs e)
{
try
{
if (StaticTasksObservableCollection.Count == 0)
{
MessageBox.Show("You must add a workflow before a run.", "Run Workflows", MessageBoxButton.OK, MessageBoxImage.Information);
return;
}
else if (RnaSeqFastqCollection.Any() && GetPathToFastqs().CompareTo(OutputFolderTextBox.Text) != 0) // to be edited
{
MessageBox.Show("FASTQ files do not exist in the user-defined analysis directory.", "Run Workflows", MessageBoxButton.OK, MessageBoxImage.Information);
return;
}
DynamicTasksObservableCollection = new ObservableCollection <InRunTask>();
DynamicTasksObservableCollection.Add(new InRunTask("Workflow 1", StaticTasksObservableCollection.First().options));
workflowTreeView.DataContext = DynamicTasksObservableCollection;
Everything = new EverythingRunnerEngine(DynamicTasksObservableCollection.Select(b => new Tuple <string, Options>(b.DisplayName, b.options)).First(), OutputFolderTextBox.Text);
Everything.SetUpDirectories();
WarningsTextBox.Document.Blocks.Clear();
WarningsTextBox.AppendText(string.Join("\n", Everything.GenerateCommandsDry().Select(x => $"Command executing: Powershell.exe {x}"))); // keep for debugging
var t = new Task(Everything.Run);
t.Start();
t.ContinueWith(DisplayAnyErrors);
// update gui
RunWorkflowButton.IsEnabled = false;
ClearTasksButton.IsEnabled = true;
BtnWorkFlow.IsEnabled = false;
ResetTasksButton.IsEnabled = true;
}
catch (TaskCanceledException)
{
// Ignore error
}
}
