private void SetFolder(string path, bool updateTree = true)
{
// stop people from clicking on a new path while this one is loading
treeViewDirUC1.Enabled = false;
if (updateTree)
{
// update the tree (will can an event to re-call fhis function)
treeViewDirUC1.SelectPath(path);
return;
}
lsFolder = new LineScanFolder(path, analyzeImmediately: false);
UpdateGuiFromLinescanFirst();
UpdateGuiFromLinescan();
if (!lsFolder.isValid)
{
SaveNeeded(false);
}
if (lsFolder.isValid && System.IO.File.Exists(lsFolder.pathIniFile))
{
SaveNeeded(false);
}
// unlock the treeview
treeViewDirUC1.Enabled = true;
}
/// <summary>
/// Load baseline, structure, and filter settings from LineScanSettings.ini in the linescan folder
/// </summary>
public static void Load(LineScanFolder ls)
{
if (!ls.isValid)
{
return;
}
if (!System.IO.File.Exists(ls.pathIniFile))
{
return;
}
foreach (string rawLine in System.IO.File.ReadAllLines(ls.pathIniFile))
{
string line = rawLine.Trim();
if (line.StartsWith(";"))
{
continue;
}
if (!line.Contains("="))
{
continue;
}
string[] lineParts = line.Split('=');
string var = lineParts[0];
string valStr = lineParts[1];
if (var == "baseline1")
{
ls.baseline1 = int.Parse(valStr);
}
else if (var == "baseline2")
{
ls.baseline2 = int.Parse(valStr);
}
else if (var == "structure1")
{
ls.structure1 = int.Parse(valStr);
}
else if (var == "structure2")
{
ls.structure2 = int.Parse(valStr);
}
else if (var == "filterPx")
{
ls.filterPx = int.Parse(valStr);
}
}
}
/// <summary>
/// Default filter time and baseline duration for unanalyzed linescans is stored in an INI next to this EXE.
/// </summary>
public static void LoadDefaultSettings(LineScanFolder ls)
{
if (!ls.isValid)
{
return;
}
if (!System.IO.File.Exists(ls.pathProgramSettings))
{
StringBuilder sb = new StringBuilder();
sb.AppendLine("; ScanAGator default settings");
sb.AppendLine("baselineEndFrac = 0.10");
sb.AppendLine(";filterTimeMs = 50.0");
System.IO.File.WriteAllText(ls.pathProgramSettings, sb.ToString());
}
string raw = System.IO.File.ReadAllText(ls.pathProgramSettings);
string[] lines = raw.Split('\n');
foreach (string thisLine in lines)
{
string line = thisLine.Trim();
if (line.StartsWith(";") || !line.Contains("="))
{
continue;
}
string var = line.Split('=')[0].Trim();
string val = line.Split('=')[1].Trim();
if (var == "baselineEndFrac")
{
ls.defaultBaselineEndFrac = double.Parse(val);
}
if (var == "filterTimeMs")
{
ls.defaultFilterTimeMs = double.Parse(val);
}
}
}
/// <summary>
/// Save baseline, structure, and filter settings to LineScanSettings.ini in the linescan folder
/// </summary>
public static void Save(LineScanFolder ls)
{
if (!ls.isValid)
{
return;
}
if (!System.IO.Directory.Exists(ls.pathSaveFolder))
{
System.IO.Directory.CreateDirectory(ls.pathSaveFolder);
}
StringBuilder sb = new StringBuilder();
sb.AppendLine("; Scan-A-Gator Linescan Settings");
sb.AppendLine($"version={ls.version}");
sb.AppendLine($"baseline1={ls.baseline1}");
sb.AppendLine($"baseline2={ls.baseline2}");
sb.AppendLine($"structure1={ls.structure1}");
sb.AppendLine($"structure2={ls.structure2}");
sb.AppendLine($"filterPx={ls.filterPx}");
System.IO.File.WriteAllText(ls.pathIniFile, sb.Replace("\n", "\r\n").ToString().Trim());
}
public static string Text(LineScanFolder ls)
{
// name, unit, comment, data...
int dataPoints = ls.imgG.height;
string[] csvLines = new string[dataPoints + 3];
// times (ms)
csvLines[0] = "Time, ";
csvLines[1] = "ms, ";
csvLines[2] = ls.folderName + ", ";
for (int i = 0; i < dataPoints; i++)
csvLines[i + 3] = Math.Round(ls.timesMsec[i], 3).ToString() + ", ";
// raw PMT values (R)
if (ls.curveR != null)
{
csvLines[0] += "R, ";
csvLines[1] += "AFU, ";
csvLines[2] += ", ";
for (int i = 0; i < dataPoints; i++)
csvLines[i + 3] += Math.Round(ls.curveR[i], 3).ToString() + ", ";
}
// raw PMT values (G)
if (ls.curveG != null)
{
csvLines[0] += "G, ";
csvLines[1] += "AFU, ";
csvLines[2] += ", ";
for (int i = 0; i < dataPoints; i++)
csvLines[i + 3] += Math.Round(ls.curveG[i], 3).ToString() + ", ";
}
// delta raw PMT values (G)
if (ls.curveDeltaG != null)
{
csvLines[0] += "dG, ";
csvLines[1] += "AFU, ";
csvLines[2] += ", ";
for (int i = 0; i < dataPoints; i++)
csvLines[i + 3] += Math.Round(ls.curveDeltaG[i], 3).ToString() + ", ";
csvLines[0] += "f(dG), ";
csvLines[1] += "AFU, ";
csvLines[2] += "filtered, ";
double[] filteredChopped = ls.GetFilteredYs(ls.curveDeltaG);
double[] filtered = new double[dataPoints];
for (int i = 0; i < dataPoints; i++)
filtered[i] = 0;
Array.Copy(filteredChopped, 0, filtered, ls.filterPx * 2, filteredChopped.Length);
for (int i = 0; i < dataPoints; i++)
if (i < ls.filterPx * 2 || i > (dataPoints - ls.filterPx * 2 * 2))
csvLines[i + 3] += ", ";
else
csvLines[i + 3] += Math.Round(filtered[i], 3).ToString() + ", ";
}
// Green over Red
if (ls.curveGoR != null)
{
csvLines[0] += "G/R, ";
csvLines[1] += "%, ";
csvLines[2] += ", ";
for (int i = 0; i < dataPoints; i++)
csvLines[i + 3] += Math.Round(ls.curveGoR[i], 3).ToString() + ", ";
}
// Delta Green over Red
if (ls.curveDeltaGoR != null)
{
csvLines[0] += "dG/R, ";
csvLines[1] += "%, ";
csvLines[2] += ", ";
for (int i = 0; i < dataPoints; i++)
csvLines[i + 3] += Math.Round(ls.curveDeltaGoR[i], 3).ToString() + ", ";
csvLines[0] += "f(dG/R), ";
csvLines[1] += "AFU, ";
csvLines[2] += "filtered, ";
double[] filteredChopped = ls.GetFilteredYs(ls.curveDeltaGoR);
double[] filtered = new double[dataPoints];
for (int i = 0; i < dataPoints; i++)
filtered[i] = 0;
Array.Copy(filteredChopped, 0, filtered, ls.filterPx * 2, filteredChopped.Length);
for (int i = 0; i < dataPoints; i++)
if (i < ls.filterPx * 2 || i > (dataPoints - ls.filterPx * 2 * 2))
csvLines[i + 3] += ", ";
else
csvLines[i + 3] += Math.Round(filtered[i], 3).ToString() + ", ";
}
// convert to CSV
string csv = "";
foreach (string line in csvLines)
csv += line + "\n";
return csv;
}