public void CalculateQValue(Dictionary <OptimalResultCondition, List <IIdentifiedSpectrum> > peptideBin)
{
foreach (var spectra in peptideBin.Values)
{
IdentifiedSpectrumUtils.CalculateQValue(spectra, scoreFunc, fdrCalc);
}
}
public void TestCalculateQValue()
{
var peptides = new MascotPeptideTextFormat().ReadFromFile(TestContext.CurrentContext.TestDirectory + "/../../../data/QTOF_Ecoli.LowRes.t.xml.peptides");
peptides.RemoveAll(m => m.ExpectValue > 0.05 || m.Peptide.PureSequence.Length < 6);
peptides.ForEach(m => m.FromDecoy = m.Proteins.Any(l => l.Contains("REVERSE_")));
IdentifiedSpectrumUtils.CalculateQValue(peptides, new ExpectValueFunction(), new TargetFalseDiscoveryRateCalculator());
Assert.AreEqual(0.0267, peptides[0].QValue, 0.0001);
}
public void CalculateQValue(List <IIdentifiedSpectrum> spectra)
{
IdentifiedSpectrumUtils.CalculateQValue(spectra, scoreFunc, fdrCalc);
}
