public void Load(System.Xml.Linq.XElement parentNode)
{
ITraqFileName = parentNode.Element("ITraqFileName").Value;
RatioPeptideToProteinBuilder = RatioPeptideToProteinBuilderFactory.FindBuilder(parentNode.Element("RatioPeptideToProteinBuilderName").Value);
References = (from refname in parentNode.Element("References").Elements("Index")
let index = int.Parse(refname.Value)
select new IsobaricIndex(index)).ToList();
MinimumProbability = MyConvert.ToDouble(parentNode.Element("MinProbability").Value);
NormalizeByMedianRatio = bool.Parse(parentNode.Element("NormalizeByMedianRatio").Value);
if (parentNode.Element("QuantifyModifiedPeptideOnly") != null)
{
QuantifyModifiedPeptideOnly = bool.Parse(parentNode.Element("QuantifyModifiedPeptideOnly").Value);
}
else
{
QuantifyModifiedPeptideOnly = false;
}
if (parentNode.Element("ModificationChars") != null)
{
ModificationChars = parentNode.Element("ModificationChars").Value;
}
else
{
ModificationChars = "!#";
}
DatasetMap = new Dictionary <string, List <string> >();
foreach (var ds in parentNode.Element("DatasetMap").Elements("Dataset"))
{
var name = ds.Element("Name").Value;
var value = (from v in ds.Element("Values").Elements("Value") select v.Value).ToList();
DatasetMap[name] = value;
}
}
public AbstractITraqProteinStatisticBuilderUI()
{
InitializeComponent();
base.SetFileArgument("ProteinsFile", new OpenFileArgument("Proteins", "noredundant"));
this.iTraqFile = new RcpaFileField(btnRLocation, txtRLocation, "ITraqFile", new OpenFileArgument("iTRAQ", "itraq.xml"), true);
this.AddComponent(this.iTraqFile);
minProbability = new RcpaDoubleField(txtValidProbability, "MinValidProbability", "Minimum valid probability", 0.01, true);
AddComponent(minProbability);
normalize = new RcpaCheckBox(cbNormalize, "Normalize", false);
AddComponent(normalize);
builders = new RcpaComboBox <IRatioPeptideToProteinBuilder>(cbRatioCalculator, "RatioBuilder", RatioPeptideToProteinBuilderFactory.GetBuilders(), 0);
AddComponent(builders);
filterPeptide = new RcpaCheckBox(cbFilterPeptide, "FilterPeptide", true);
AddComponent(filterPeptide);
modifiedPeptideOnly = new RcpaCheckBox(cbModifiedOnly, "ModifiedOnly", false);
AddComponent(modifiedPeptideOnly);
modifiedChar = new RcpaTextField(txtModifiedCharacter, "ModifiedChar", "Input modified characters which indicates isobaric labelling(such as @#)", "@#", false);
modifiedChar.PreCondition = cbModifiedOnly;
AddComponent(modifiedChar);
AddComponent(itraqIons);
AddComponent(pnlClassification);
}
