override public void ThreadProc(Object stateInfo)
{
int i, j;
i = (stateInfo as QAlInfo).i;
j = (stateInfo as QAlInfo).j;
QAlignment Align = new QAlignment(Peptides, Proteins, i, j);
Align.Run();
Align.Proteins.Sort(new ProteinPair.byIPI());
Align.Peptides.Sort(new PeptidePair.bySet());
//копирование итоговых значений в итоговые массивы
for (int k = 0; k < Peptides.Count; k++)
{
PeptidePair PP = Align.Peptides[k];
if (PP.Ratio == 0.0)
{
PeptideRatios[i, j][k] = 0.0;
}
else
{
PeptideRatios[i, j][k] = PP.Ratio;
}
}
for (int k = 0; k < Proteins.Count; k++)
{
ProteinPair PP = Align.Proteins[k];
ProteinMedians[i, j, k] = PP.Median;
ProteinSlopes[i, j, k] = PP.Slope;
ProteinDeltas[i, j, k] = PP.SlopeDelta;
}
lock (ForCountLock){
Count++;
}
}
public RefAligner(List <QPeptide> Peptides, List <QProtein> Proteins, int FileCount, int RefNumber)
{
AlList = new List <Object>();
AlLine = new QAlignment[FileCount];
this.FileCount = FileCount;
this.RefNumber = RefNumber;
for (int i = 0; i < FileCount; i++)
{
AlLine[i] = new QAlignment(Peptides, Proteins, i, RefNumber);
AlList.Add(AlLine[i]);
}
}
public override ProteinPair GetProtPair(QProtein Prot, int Left, int Right)
{
if (Right != RefNumber || Left > FileCount - 1)
{
return(null);
}
QAlignment TargetAl = AlLine[Left];
for (int i = 0; i < TargetAl.Proteins.Count; i++)
{
if (TargetAl.Proteins[i].Protein == Prot)
{
return(TargetAl.Proteins[i]);
}
}
return(null);
}
public override PeptidePair GetPeptPair(QPeptide Pept, int Left, int Right)
{
if (Right != RefNumber || Left > FileCount - 1)
{
return(null);
}
QAlignment TargetAl = AlLine[Left];
for (int i = 0; i < TargetAl.Peptides.Count; i++)
{
if (TargetAl.Peptides[i].Peptide == Pept)
{
return(TargetAl.Peptides[i]);
}
}
return(null);
}
