private void tb_filter1_TextChanged(object sender, EventArgs e)
{
int selected_index = Lollipop.file_lists.ToList().IndexOf(cmb_loadTable1.Text);
DisplayUtility.FillDataGridView(dgv_loadFiles1, ExtensionMethods.filter(Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[selected_index]), tb_filter1.Text).OfType <InputFile>().Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv_loadFiles1, Lollipop.file_types[selected_index]);
}
private void add_files(ComboBox cmb, DataGridView dgv)
{
int selected_index = Lollipop.file_lists.ToList().IndexOf(cmb.Text);
OpenFileDialog openFileDialog = new OpenFileDialog();
openFileDialog.Title = cmb.SelectedItem.ToString();
openFileDialog.Filter = Lollipop.file_filters[selected_index];
openFileDialog.Multiselect = true;
DialogResult dr = openFileDialog.ShowDialog();
if (dr == DialogResult.OK)
{
Sweet.lollipop.enter_input_files(openFileDialog.FileNames, Lollipop.acceptable_extensions[selected_index], Lollipop.file_types[selected_index], Sweet.lollipop.input_files, true);
refresh_dgvs();
if (openFileDialog.FileNames.Any(f => Path.GetExtension(f) == ".raw"))
{
ValidateThermoMsFileReaderVersion();
}
}
DisplayUtility.FillDataGridView(dgv, Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[selected_index]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv, Lollipop.file_types[selected_index]);
}
private void btn_downloadUniProtPtmList_Click(object sender, EventArgs e)
{
SaveState.lollipop.enter_uniprot_ptmlist();
DisplayUtility.FillDataGridView(dgv_loadFiles, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv_loadFiles, Lollipop.file_types[cmb_loadTable.SelectedIndex]);
btn_downloadUniProtPtmList.Enabled = false;
}
private void clear_files(ComboBox cmb, DataGridView dgv)
{
SaveState.lollipop.input_files = SaveState.lollipop.input_files.Except(SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb.SelectedIndex])).ToList();
match_files();
DisplayUtility.FillDataGridView(dgv, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb.SelectedIndex]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv, Lollipop.file_types[cmb.SelectedIndex]);
}
private void drag_drop(DragEventArgs e, ComboBox cmb, DataGridView dgv)
{
string[] files = (string[])e.Data.GetData(DataFormats.FileDrop);
Sweet.lollipop.enter_input_files(files, Lollipop.acceptable_extensions[cmb.SelectedIndex], Lollipop.file_types[cmb.SelectedIndex], Sweet.lollipop.input_files, true);
DisplayUtility.FillDataGridView(dgv, Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[cmb.SelectedIndex]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv, Lollipop.file_types[cmb.SelectedIndex]);
}
public void FillTablesAndCharts()
{
DisplayUtility.FillDataGridView(dgv_fileList, Sweet.lollipop.get_files(Sweet.lollipop.input_files, new Purpose[] { Purpose.Identification, Purpose.Quantification }).Select(c => new DisplayInputFile(c)));
DisplayInputFile.FormatInputFileTable(dgv_fileList, new Purpose[] { Purpose.Identification, Purpose.Quantification });
dgv_fileList.ReadOnly = true;
if (rb_displayIdentificationComponents.Checked && Sweet.lollipop.raw_experimental_components.Count > 0)
{
DisplayUtility.FillDataGridView(dgv_rawComponents, Sweet.lollipop.raw_experimental_components.Select(c => new DisplayComponent(c)));
}
if (rb_displayQuantificationComponents.Checked && Sweet.lollipop.raw_quantification_components.Count > 0)
{
DisplayUtility.FillDataGridView(dgv_rawComponents, Sweet.lollipop.raw_quantification_components.Select(c => new DisplayComponent(c)));
}
DisplayComponent.FormatComponentsTable(dgv_rawComponents);
rtb_raw_components_counts.Text = ResultsSummaryGenerator.raw_components_report();
NeuCodePairs pairs_form = (MdiParent as ProteoformSweet).neuCodePairs;
if (Sweet.lollipop.neucode_labeled && pairs_form.ReadyToRunTheGamut())
{
pairs_form.RunTheGamut(false);
}
}
private void btn_clearFiles_Click(object sender, EventArgs e)
{
SaveState.lollipop.input_files = SaveState.lollipop.input_files.Except(SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex])).ToList();
DisplayUtility.FillDataGridView(dgv_loadFiles, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv_loadFiles, Lollipop.file_types[cmb_loadTable.SelectedIndex]);
set_Make_Database_Button();
}
private void btn_downloadUniProtPtmList_Click(object sender, EventArgs e)
{
Lollipop.enter_uniprot_ptmlist(Environment.CurrentDirectory);
DisplayUtility.FillDataGridView(dgv_loadFiles, Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv_loadFiles, Lollipop.file_types[cmb_loadTable.SelectedIndex]);
btn_downloadUniProtPtmList.Enabled = false;
SetMakeDatabaseButton();
}
private void btn_clearFiles_Click(object sender, EventArgs e)
{
List <InputFile> files_to_remove = Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex]).ToList();
Sweet.save_actions.RemoveAll(a => files_to_remove.Any(f => a.Contains(f.complete_path)));
Sweet.lollipop.input_files = Sweet.lollipop.input_files.Except(files_to_remove).ToList();
DisplayUtility.FillDataGridView(dgv_loadFiles, Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv_loadFiles, Lollipop.file_types[cmb_loadTable.SelectedIndex]);
}
private void reload_dgvs()
{
DisplayUtility.FillDataGridView(dgv_loadFiles1, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb_loadTable1.SelectedIndex]).Select(f => new DisplayInputFile(f)));
DisplayUtility.FillDataGridView(dgv_loadFiles2, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb_loadTable2.SelectedIndex]).Select(f => new DisplayInputFile(f)));
DisplayUtility.FillDataGridView(dgv_loadFiles3, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb_loadTable3.SelectedIndex]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv_loadFiles1, Lollipop.file_types[cmb_loadTable1.SelectedIndex]);
DisplayInputFile.FormatInputFileTable(dgv_loadFiles2, Lollipop.file_types[cmb_loadTable2.SelectedIndex]);
DisplayInputFile.FormatInputFileTable(dgv_loadFiles3, Lollipop.file_types[cmb_loadTable3.SelectedIndex]);
}
public void reload_database_list()
{
cmb_loadTable.Items.Clear();
cmb_loadTable.Items.AddRange(Lollipop.file_lists);
cmb_loadTable.SelectedIndex = 2;
DisplayUtility.FillDataGridView(dgv_loadFiles, Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv_loadFiles, Lollipop.file_types[cmb_loadTable.SelectedIndex]);
initialize_table_bindinglist();
}
private void clear_files(ComboBox cmb, DataGridView dgv)
{
int selected_index = Lollipop.file_lists.ToList().IndexOf(cmb.Text);
List <InputFile> files_to_remove = Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[selected_index]).ToList();
Sweet.save_actions.RemoveAll(a => files_to_remove.Any(f => a.Contains(f.complete_path)));
Sweet.lollipop.input_files = Sweet.lollipop.input_files.Except(files_to_remove).ToList();
refresh_dgvs();
DisplayUtility.FillDataGridView(dgv, Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[selected_index]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv, Lollipop.file_types[selected_index]);
}
public void reload_database_list()
{
cmb_loadTable.Items.Clear();
cmb_loadTable.Items.AddRange(Lollipop.file_lists);
cmb_loadTable.SelectedIndex = 2;
DisplayUtility.FillDataGridView(dgv_loadFiles, Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv_loadFiles, Lollipop.file_types[cmb_loadTable.SelectedIndex]);
initialize_table_bindinglist();
if (!SetMakeDatabaseButton() && Sweet.lollipop.get_files(Sweet.lollipop.input_files, Purpose.ProteinDatabase).Count() > 0)
{
MessageBox.Show("You still need a PTM list. Please use the \"Donwload UniProt PTM List\" button.", "Enabling Make Database Button");
}
}
public List <DataTable> SetTables()
{
DataTables = new List <DataTable>();
if (Sweet.lollipop.get_files(Sweet.lollipop.input_files, Purpose.Identification).Count() > 0)
{
DataTables.Add(DisplayInputFile.FormatInputFileTable(Sweet.lollipop.get_files(Sweet.lollipop.input_files, Purpose.Identification).Select(x => new DisplayInputFile(x)).ToList(), "IdentificationFiles", new List <Purpose> {
Purpose.Identification
}));
}
if (Sweet.lollipop.get_files(Sweet.lollipop.input_files, Purpose.CalibrationIdentification).Count() > 0)
{
DataTables.Add(DisplayInputFile.FormatInputFileTable(Sweet.lollipop.get_files(Sweet.lollipop.input_files, Purpose.CalibrationIdentification).Select(x => new DisplayInputFile(x)).ToList(), "CalibrationIdentificationFiles", new List <Purpose> {
Purpose.CalibrationIdentification
}));
}
if (Sweet.lollipop.get_files(Sweet.lollipop.input_files, Purpose.CalibrationTopDown).Count() > 0)
{
DataTables.Add(DisplayInputFile.FormatInputFileTable(Sweet.lollipop.get_files(Sweet.lollipop.input_files, Purpose.CalibrationTopDown).Select(x => new DisplayInputFile(x)).ToList(), "CalibrationTopDownFiles", new List <Purpose> {
Purpose.CalibrationTopDown
}));
}
if (Sweet.lollipop.get_files(Sweet.lollipop.input_files, Purpose.TopDown).Count() > 0)
{
DataTables.Add(DisplayInputFile.FormatInputFileTable(Sweet.lollipop.get_files(Sweet.lollipop.input_files, Purpose.TopDown).Select(x => new DisplayInputFile(x)).ToList(), "TopDown", new List <Purpose> {
Purpose.TopDown
}));
}
if (Sweet.lollipop.get_files(Sweet.lollipop.input_files, Purpose.BottomUp).Count() > 0)
{
DataTables.Add(DisplayInputFile.FormatInputFileTable(Sweet.lollipop.get_files(Sweet.lollipop.input_files, Purpose.BottomUp).Select(x => new DisplayInputFile(x)).ToList(), "BottomUp", new List <Purpose> {
Purpose.BottomUp
}));
}
if (Sweet.lollipop.get_files(Sweet.lollipop.input_files, Purpose.Quantification).Count() > 0)
{
DataTables.Add(DisplayInputFile.FormatInputFileTable(Sweet.lollipop.get_files(Sweet.lollipop.input_files, Purpose.Quantification).Select(x => new DisplayInputFile(x)).ToList(), "QuantificationFiles", new List <Purpose> {
Purpose.Quantification
}));
}
if (Sweet.lollipop.get_files(Sweet.lollipop.input_files, new List <Purpose> {
Purpose.PtmList, Purpose.ProteinDatabase
}).Count() > 0)
{
DataTables.Add(DisplayInputFile.FormatInputFileTable(Sweet.lollipop.get_files(Sweet.lollipop.input_files, new List <Purpose> {
Purpose.PtmList, Purpose.ProteinDatabase
}).Select(x => new DisplayInputFile(x)).ToList(), "ProteinDatabases", new List <Purpose> {
Purpose.ProteinDatabase, Purpose.PtmList
}));
}
return(DataTables);
}
private void btn_addFiles_Click(object sender, EventArgs e)
{
OpenFileDialog openFileDialog = new OpenFileDialog();
openFileDialog.Title = cmb_loadTable.SelectedItem.ToString();
openFileDialog.Filter = Lollipop.file_filters[cmb_loadTable.SelectedIndex];
openFileDialog.Multiselect = true;
DialogResult dr = openFileDialog.ShowDialog();
if (dr == DialogResult.OK)
{
Sweet.lollipop.enter_input_files(openFileDialog.FileNames, Lollipop.acceptable_extensions[cmb_loadTable.SelectedIndex], Lollipop.file_types[cmb_loadTable.SelectedIndex], Sweet.lollipop.input_files, true);
}
DisplayUtility.FillDataGridView(dgv_loadFiles, Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv_loadFiles, Lollipop.file_types[cmb_loadTable.SelectedIndex]);
}
private void add_files(ComboBox cmb, DataGridView dgv)
{
OpenFileDialog openFileDialog = new OpenFileDialog();
openFileDialog.Title = cmb.SelectedItem.ToString();
openFileDialog.Filter = Lollipop.file_filters[cmb.SelectedIndex];
openFileDialog.Multiselect = true;
DialogResult dr = openFileDialog.ShowDialog();
if (dr == DialogResult.OK)
{
SaveState.lollipop.enter_input_files(openFileDialog.FileNames, Lollipop.acceptable_extensions[cmb.SelectedIndex], Lollipop.file_types[cmb.SelectedIndex], SaveState.lollipop.input_files);
match_files();
}
DisplayUtility.FillDataGridView(dgv, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb.SelectedIndex]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv, Lollipop.file_types[cmb.SelectedIndex]);
}
private void btn_addFiles_Click(object sender, EventArgs e)
{
OpenFileDialog openFileDialog = new OpenFileDialog();
openFileDialog.Title = cmb_loadTable.SelectedItem.ToString();
openFileDialog.Filter = Lollipop.file_filters[cmb_loadTable.SelectedIndex];
openFileDialog.Multiselect = true;
DialogResult dr = openFileDialog.ShowDialog();
if (dr == DialogResult.OK)
{
Sweet.lollipop.enter_input_files(openFileDialog.FileNames, Lollipop.acceptable_extensions[cmb_loadTable.SelectedIndex], Lollipop.file_types[cmb_loadTable.SelectedIndex], Sweet.lollipop.input_files, true);
}
DisplayUtility.FillDataGridView(dgv_loadFiles, Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[cmb_loadTable.SelectedIndex]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv_loadFiles, Lollipop.file_types[cmb_loadTable.SelectedIndex]);
if (!SetMakeDatabaseButton() && Sweet.lollipop.get_files(Sweet.lollipop.input_files, Purpose.ProteinDatabase).Count() > 0)
{
MessageBox.Show("You still need a PTM list. Please use the \"Donwload UniProt PTM List\" button.", "Enabling Make Database Button");
}
}
private void cmb_loadTable3_SelectedIndexChanged(object sender, EventArgs e)
{
DisplayUtility.FillDataGridView(dgv_loadFiles3, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb_loadTable3.SelectedIndex]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv_loadFiles3, Lollipop.file_types[cmb_loadTable3.SelectedIndex]);
lb_filter3.Text = cmb_loadTable1.SelectedItem.ToString();
}
private void tb_filter3_TextChanged(object sender, EventArgs e)
{
DisplayUtility.FillDataGridView(dgv_loadFiles3, ExtensionMethods.filter(SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb_loadTable3.SelectedIndex]), tb_filter3.Text).OfType <InputFile>().Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv_loadFiles3, Lollipop.file_types[cmb_loadTable3.SelectedIndex]);
}
private void reload_dgvs()
{
DisplayUtility.FillDataGridView(dgv_loadFiles1, Sweet.lollipop.get_files(Sweet.lollipop.input_files, Lollipop.file_types[Lollipop.file_lists.ToList().IndexOf(cmb_loadTable1.Text)]).Select(f => new DisplayInputFile(f)));
DisplayInputFile.FormatInputFileTable(dgv_loadFiles1, Lollipop.file_types[Lollipop.file_lists.ToList().IndexOf(cmb_loadTable1.Text)]);
}