public DistributedParameterToTableParameterConverter(
IFormulaFactory formulaFactory,
IEntityPathResolver entityPathResolver,
IParameterFactory parameterFactory,
ICloneManager cloneManager,
IParameterQuery parameterQuery,
IDimensionRepository dimensionRepository,
IOntogenyRepository ontogenyRepository,
IFullPathDisplayResolver fullPathDisplayResolver,
IInterpolation interpolation,
IParameterStartValuesCreator parameterStartValuesCreator,
IObjectPathFactory objectPathFactory,
IGenderRepository genderRepository)
{
_formulaFactory = formulaFactory;
_entityPathResolver = entityPathResolver;
_parameterFactory = parameterFactory;
_cloneManager = cloneManager;
_parameterQuery = parameterQuery;
_dimensionRepository = dimensionRepository;
_ontogenyRepository = ontogenyRepository;
_fullPathDisplayResolver = fullPathDisplayResolver;
_interpolation = interpolation;
_parameterStartValuesCreator = parameterStartValuesCreator;
_objectPathFactory = objectPathFactory;
_genderRepository = genderRepository;
_timeDimension = dimensionRepository.Time;
_yearUnit = _timeDimension.Unit(dimensionRepository.AgeInYears.BaseUnit.Name);
}
protected override void Context()
{
_view = A.Fake <ITableParameterView>();
_parameterTask = A.Fake <IParameterTask>();
_formulaFactory = A.Fake <IFormulaFactory>();
_cloner = A.Fake <ICloner>();
_tableFormula = new TableFormula {
Id = "1"
};
_tableFormula.XDimension = DomainHelperForSpecs.TimeDimensionForSpecs();
_tableFormula.XDisplayUnit = _tableFormula.XDimension.BaseUnit;
_tableFormula.Dimension = DomainHelperForSpecs.LengthDimensionForSpecs();
_tableFormula.YDisplayUnit = _tableFormula.Dimension.BaseUnit;
_editedFormula = new TableFormula {
Id = "2"
};
_editedFormula.XDimension = DomainHelperForSpecs.TimeDimensionForSpecs();
_editedFormula.XDisplayUnit = _editedFormula.XDimension.BaseUnit;
_editedFormula.Dimension = DomainHelperForSpecs.LengthDimensionForSpecs();
_editedFormula.YDisplayUnit = _editedFormula.Dimension.BaseUnit;
A.CallTo(() => _cloner.Clone(_tableFormula)).Returns(_editedFormula);
sut = new TableParametersForSpecs(_view, _parameterTask, _cloner, _formulaFactory);
sut.InitializeWith(A.Fake <ICommandCollector>());
_parameter = new PKSimParameter().WithFormula(_tableFormula);
}
public PKSimParameterStartValuesCreator(IParameterStartValuesCreator parameterStartValuesCreator,
IFormulaFactory formulaFactory,
IEntityPathResolver entityPathResolver)
{
_parameterStartValuesCreator = parameterStartValuesCreator;
_formulaFactory = formulaFactory;
_entityPathResolver = entityPathResolver;
}
public FormulationTask(IExecutionContext executionContext, IBuildingBlockTask buildingBlockTask, IApplicationController applicationController, IDataImporter dataImporter,
IDimensionRepository dimensionRepository, IFormulaFactory formulaFactory)
: base(executionContext, buildingBlockTask, applicationController, PKSimBuildingBlockType.Formulation)
{
DimensionRepository = dimensionRepository;
_dataImporter = dataImporter;
_dimensionRepository = dimensionRepository;
_formulaFactory = formulaFactory;
}
public FlatObserverToObserverBuilderMapper(IObjectBaseFactory entityBaseFactory,
IFlatObserverDescriptorConditionRepository observerDescriptorRepo,
IFormulaFactory formulaFactory, IDimensionRepository dimensionRepository)
{
_entityBaseFactory = entityBaseFactory;
_observerDescriptorRepo = observerDescriptorRepo;
_formulaFactory = formulaFactory;
_dimensionRepository = dimensionRepository;
}
protected override void Context()
{
_dimension = A.Fake <IDimension>();
_dimension.DefaultUnit = A.Fake <Unit>();
_objectBaseFactory = A.Fake <IPKSimObjectBaseFactory>();
_formulaFactory = A.Fake <IFormulaFactory>();
_dimensionRepository = A.Fake <IDimensionRepository>();
_displayUnitRetriever = A.Fake <IDisplayUnitRetriever>();
sut = new ParameterFactory(_objectBaseFactory, _formulaFactory, _dimensionRepository, _displayUnitRetriever);
}
public FlatProcessToActiveProcessMapper(IObjectBaseFactory entityBaseFactory, IFormulaFactory formulaFactory,
IFlatProcessDescriptorConditionRepository processDescriptorRepository,
IRepresentationInfoRepository representationInfoRepository,
IFlatReactionPartnerRepository reactionPartnerRepository)
{
_entityBaseFactory = entityBaseFactory;
_formulaFactory = formulaFactory;
_processDescriptorRepository = processDescriptorRepository;
_representationInfoRepository = representationInfoRepository;
_reactionPartnerRepository = reactionPartnerRepository;
}
public CalculationMethodToCoreCalculationMethodMapper(IFlatCalculationMethodParameterRateRepository flatCalculationMethodParameterRateRepository,
IFlatCalculationMethodParameterDescriptorConditionRepository flatCalculationMethodParameterDescriptorConditionRepository,
ICalculationMethodRepository calculationMethodRepository,
IFormulaFactory formulaFactory,
IParameterFactory parameterFactory)
{
_flatCalculationMethodParameterRateRepository = flatCalculationMethodParameterRateRepository;
_flatCalculationMethodParameterDescriptorConditionRepository = flatCalculationMethodParameterDescriptorConditionRepository;
_calculationMethodRepository = calculationMethodRepository;
_formulaFactory = formulaFactory;
_parameterFactory = parameterFactory;
}
public PKSimParameterStartValuesCreator(IParameterStartValuesCreator parameterStartValuesCreator, IObjectPathFactory objectPathFactory,
IObjectBaseFactory objectBaseFactory, IExpressionContainersRetriever expressionContainersRetriever, IFormulaFactory formulaFactory,
IEntityPathResolver entityPathResolver)
{
_parameterStartValuesCreator = parameterStartValuesCreator;
_objectPathFactory = objectPathFactory;
_objectBaseFactory = objectBaseFactory;
_expressionContainersRetriever = expressionContainersRetriever;
_formulaFactory = formulaFactory;
_entityPathResolver = entityPathResolver;
_method = CoreConstants.CalculationMethod.ActiveProcess;
}
public FlatProcessToPassiveTransportMapper(IObjectBaseFactory entityBaseFactory,
IFlatProcessDescriptorConditionRepository processDescriptorRepo,
IParameterContainerTask parameterContainerTask,
IFormulaFactory formulaFactory,
IDimensionRepository dimensionRepository)
{
_entityBaseFactory = entityBaseFactory;
_processDescriptorRepo = processDescriptorRepo;
_parameterContainerTask = parameterContainerTask;
_formulaFactory = formulaFactory;
_dimensionRepository = dimensionRepository;
}
protected override void Context()
{
_parameterAlternativeFactory = A.Fake <IParameterAlternativeFactory>();
_applicationController = A.Fake <IApplicationController>();
_executionContext = A.Fake <IExecutionContext>();
_entityTask = A.Fake <IEntityTask>();
_formulaFactory = A.Fake <IFormulaFactory>();
_parameterTask = A.Fake <IParameterTask>();
_buildingBlockRepository = A.Fake <IBuildingBlockRepository>();
_compoundFactory = new CompoundFactoryForSpecs();
sut = new CompoundAlternativeTask(_parameterAlternativeFactory, _applicationController,
_executionContext, _compoundFactory, _entityTask, _formulaFactory, _parameterTask, _buildingBlockRepository);
}
protected override void Context()
{
_objectBaseFactory = A.Fake <IObjectBaseFactory>();
_cloner = A.Fake <ICloner>();
_speciesRepository = A.Fake <ISpeciesRepository>();
//necessary to create compound since default parameter willl be added to the group based on compound parameters
_compound = new Compound();
_compoundParameterGroup = new ParameterAlternativeGroup();
_compound.AddParameterAlternativeGroup(_compoundParameterGroup);
_userSettings = A.Fake <ICoreUserSettings>();
_formulaFactory = A.Fake <IFormulaFactory>();
sut = new ParameterAlternativeFactory(_objectBaseFactory, _cloner, _speciesRepository, _userSettings, _formulaFactory);
}
public CompoundAlternativeTask(IParameterAlternativeFactory parameterAlternativeFactory, IApplicationController applicationController,
IExecutionContext executionContext, ICompoundFactory compoundFactory, IEntityTask entityTask,
IFormulaFactory formulaFactory, IParameterTask parameterTask, IBuildingBlockRepository buildingBlockRepository)
{
_parameterAlternativeFactory = parameterAlternativeFactory;
_applicationController = applicationController;
_executionContext = executionContext;
_compoundFactory = compoundFactory;
_entityTask = entityTask;
_formulaFactory = formulaFactory;
_parameterTask = parameterTask;
_buildingBlockRepository = buildingBlockRepository;
}
protected override void Context()
{
_parameterAlternativeFactory = A.Fake <IParameterAlternativeFactory>();
_executionContext = A.Fake <IExecutionContext>();
_formulaFactory = A.Fake <IFormulaFactory>();
_parameterTask = A.Fake <IParameterTask>();
_buildingBlockRepository = A.Fake <IBuildingBlockRepository>();
_dimensionRepository = A.Fake <IDimensionRepository>();
_dataImporter = A.Fake <IDataImporter>();
_compoundFactory = new CompoundFactoryForSpecs();
sut = new CompoundAlternativeTask(_parameterAlternativeFactory,
_executionContext, _compoundFactory, _formulaFactory, _parameterTask,
_buildingBlockRepository, _dimensionRepository, _dataImporter);
}
public CompoundAlternativeTask(
IParameterAlternativeFactory parameterAlternativeFactory,
IExecutionContext executionContext,
ICompoundFactory compoundFactory,
IFormulaFactory formulaFactory,
IParameterTask parameterTask,
IBuildingBlockRepository buildingBlockRepository,
IDimensionRepository dimensionRepository,
IDataImporter dataImporter)
{
_parameterAlternativeFactory = parameterAlternativeFactory;
_executionContext = executionContext;
_compoundFactory = compoundFactory;
_formulaFactory = formulaFactory;
_parameterTask = parameterTask;
_buildingBlockRepository = buildingBlockRepository;
_dimensionRepository = dimensionRepository;
_dataImporter = dataImporter;
}
public TableParametersForSpecs(ITableParameterView view, IParameterTask parameterTask, ICloner cloneManager, IFormulaFactory formulaFactory) :
base(view, parameterTask, formulaFactory, cloneManager, () => new TableFormula {
Id = "new"
})
{
}
protected FormulationValuesSpecification(IFormulaFactory formulaFactory)
{
_formulaFactory = formulaFactory;
}
