private void startGroup(Chain chain, string group3, int groupSequenceNumber,
char groupInsertionCode, int firstAtomIndex)
{
if (groupCount == group3s.Length)
{
chains = (Chain[])Util.doubleLength(chains);
group3s = Util.doubleLength(group3s);
seqcodes = Util.doubleLength(seqcodes);
firstAtomIndexes = Util.doubleLength(firstAtomIndexes);
}
firstAtomIndexes[groupCount] = firstAtomIndex;
chains[groupCount] = chain;
group3s[groupCount] = group3;
seqcodes[groupCount] = Group.getSeqcode(groupSequenceNumber, groupInsertionCode);
++groupCount;
}
public void defineStructure(string structureType, char startChainID, int startSequenceNumber, char startInsertionCode, char endChainID, int endSequenceNumber, char endInsertionCode)
{
/*
* System.out.println("Mmset.defineStructure(" + structureType + "," +
* chainID + "," +
* startSequenceNumber + "," + startInsertionCode + "," +
* endSequenceNumber + "," + endInsertionCode + ")" );
*/
if (structureCount == structures.Length)
{
structures = (Structure[])Util.setLength(structures, structureCount + 10);
}
structures[structureCount++] = new Structure(structureType, startChainID, Group.getSeqcode(startSequenceNumber, startInsertionCode), endChainID, Group.getSeqcode(endSequenceNumber, endInsertionCode));
}