///<summary>Called after file is downloaded. Throws exceptions. It is assumed that this is called from a worker thread. Progress delegate will be called every 100th iteration to inform thread of current progress. Quit flag can be set at any time in order to quit importing prematurely.</summary>
public static void ImportRxNorm(string tempFileName, ProgressArgs progress, ref bool quit)
{
if (tempFileName == null)
{
return;
}
HashSet <string> codeHash = new HashSet <string>(RxNorms.GetAllCodes());
string[] lines = File.ReadAllLines(tempFileName);
string[] arrayRxNorm;
RxNorm rxNorm = new RxNorm();
for (int i = 0; i < lines.Length; i++) //each loop should read exactly one line of code. and each line of code should be a unique code
{
if (quit)
{
return;
}
if (i % 100 == 0)
{
progress(i + 1, lines.Length);
}
arrayRxNorm = lines[i].Split('\t');
if (codeHash.Contains(arrayRxNorm[0])) //code already exists
{
continue;
}
rxNorm.RxCui = arrayRxNorm[0];
rxNorm.MmslCode = arrayRxNorm[1];
rxNorm.Description = arrayRxNorm[2];
RxNorms.Insert(rxNorm);
}
}
private void gridMain_CellDoubleClick(object sender,ODGridClickEventArgs e) {
if(!IsSelectionMode) {
return;
}
SelectedRxNorm=rxList[e.Row];
ListSelectedRxNorms=new List<RxNorm>();
ListSelectedRxNorms.Add(rxList[e.Row]);
DialogResult=DialogResult.OK;
}
///<summary></summary>
public static long Insert(RxNorm rxNorm)
{
if (RemotingClient.RemotingRole == RemotingRole.ClientWeb)
{
rxNorm.RxNormNum = Meth.GetLong(MethodBase.GetCurrentMethod(), rxNorm);
return(rxNorm.RxNormNum);
}
return(Crud.RxNormCrud.Insert(rxNorm));
}
///<summary></summary>
public static void Update(RxNorm rxNorm)
{
if (RemotingClient.RemotingRole == RemotingRole.ClientWeb)
{
Meth.GetVoid(MethodBase.GetCurrentMethod(), rxNorm);
return;
}
Crud.RxNormCrud.Update(rxNorm);
}
private void butOK_Click(object sender,EventArgs e)
{
if(gridMain.GetSelectedIndex()<0) {
MsgBox.Show(this,"Please select an item first.");
return;
}
SelectedRxNorm=rxList[gridMain.GetSelectedIndex()];
DialogResult=DialogResult.OK;
}
///<summary>Called after file is downloaded. Throws exceptions. It is assumed that this is called from a worker thread. Progress delegate will be called every 100th iteration to inform thread of current progress. Quit flag can be set at any time in order to quit importing prematurely.</summary>
public static void ImportRxNorm(string tempFileName, ProgressArgs progress, ref bool quit, ref int numCodesImported, ref int numCodesUpdated,
bool updateExisting)
{
if (tempFileName == null)
{
return;
}
//RxNorms can have two codes for each RxCui. One RxNorm will have a value in the MmslCode and a blank description and the other will have a
//value in the Description and a blank MmslCode.
List <RxNorm> listRxNorms = RxNorms.GetAll();
Dictionary <string, RxNorm> dictRxNormsMmslCodes = listRxNorms.Where(x => x.MmslCode != "").ToDictionary(x => x.RxCui, x => x);
Dictionary <string, RxNorm> dictRxNormsDefinitions = listRxNorms.Where(x => x.Description != "").ToDictionary(x => x.RxCui, x => x);
string[] lines = File.ReadAllLines(tempFileName);
string[] arrayRxNorm;
RxNorm rxNorm = new RxNorm();
for (int i = 0; i < lines.Length; i++) //Each loop should read exactly one line of code. Each line will NOT be a unique code.
{
if (quit)
{
return;
}
if (i % 100 == 0)
{
progress(i + 1, lines.Length);
}
arrayRxNorm = lines[i].Split('\t');
if (dictRxNormsMmslCodes.ContainsKey(arrayRxNorm[0])) //code with an MmslCode already exists
{
rxNorm = dictRxNormsMmslCodes[arrayRxNorm[0]];
if (updateExisting)
{
if (arrayRxNorm[1] != "" && arrayRxNorm[1] != rxNorm.MmslCode)
{
rxNorm.MmslCode = arrayRxNorm[1];
rxNorm.Description = ""; //Should be blank for all MMSL code entries. See below for non-MMSL entries with descriptions.
RxNorms.Update(rxNorm);
numCodesUpdated++;
}
}
continue;
}
if (dictRxNormsDefinitions.ContainsKey(arrayRxNorm[0])) //code with a Description already exists
{
rxNorm = dictRxNormsDefinitions[arrayRxNorm[0]];
if (updateExisting)
{
string newDescript = arrayRxNorm[2];
//if(newDescript.Length>255) {
// newDescript=newDescript.Substring(0,255);//Description column is only varchar(255) so some descriptions will get truncated.
//}
//if(arrayRxNorm[2]!="" && newDescript!=rxNorm.Description) {
if (arrayRxNorm[2] != "" && arrayRxNorm[2] != rxNorm.Description)
{
rxNorm.MmslCode = ""; //should be blank for all entries that have a description.
rxNorm.Description = arrayRxNorm[2];
RxNorms.Update(rxNorm);
numCodesUpdated++;
}
}
continue;
}
rxNorm.RxCui = arrayRxNorm[0];
rxNorm.MmslCode = arrayRxNorm[1];
rxNorm.Description = arrayRxNorm[2];
RxNorms.Insert(rxNorm);
numCodesImported++;
}
}
///<summary>Called after file is downloaded. Throws exceptions. It is assumed that this is called from a worker thread. Progress delegate will be called every 100th iteration to inform thread of current progress. Quit flag can be set at any time in order to quit importing prematurely.</summary>
public static void ImportRxNorm(string tempFileName,ProgressArgs progress,ref bool quit) {
if(tempFileName==null) {
return;
}
HashSet<string> codeHash=new HashSet<string>(RxNorms.GetAllCodes());
string[] lines=File.ReadAllLines(tempFileName);
string[] arrayRxNorm;
RxNorm rxNorm=new RxNorm();
for(int i=0;i<lines.Length;i++) {//each loop should read exactly one line of code. and each line of code should be a unique code
if(quit) {
return;
}
if(i%100==0) {
progress(i+1,lines.Length);
}
arrayRxNorm=lines[i].Split('\t');
if(codeHash.Contains(arrayRxNorm[0])) {//code already exists
continue;
}
rxNorm.RxCui =arrayRxNorm[0];
rxNorm.MmslCode =arrayRxNorm[1];
rxNorm.Description =arrayRxNorm[2];
RxNorms.Insert(rxNorm);
}
}
private void butOK_Click(object sender,EventArgs e) {
if(gridMain.GetSelectedIndex()<0) {
MsgBox.Show(this,"Please select an item first.");
return;
}
SelectedRxNorm=rxList[gridMain.GetSelectedIndex()];
ListSelectedRxNorms=new List<RxNorm>();
for(int i=0;i<gridMain.SelectedIndices.Length;i++) {
ListSelectedRxNorms.Add(rxList[gridMain.SelectedIndices[i]]);
}
DialogResult=DialogResult.OK;
}
//private void butRxNorm_Click(object sender,EventArgs e) {
// //if(!MsgBox.Show(this,MsgBoxButtons.OKCancel,"This will ")) {
// // return;
// //}
// Cursor=Cursors.WaitCursor;
// RxNorms.CreateFreshRxNormTableFromZip();
// Cursor=Cursors.Default;
// MsgBox.Show(this,"done");
// //just making sure it worked:
// /*
// RxNorm rxNorm=RxNorms.GetOne(1);
// MsgBox.Show(this,rxNorm.RxNormNum+" "+rxNorm.RxCui+" "+rxNorm.MmslCode+" "+rxNorm.Description);
// MsgBox.Show(this,RxNorms.GetMmslCodeByRxCui("1000005")+" <-- should be 26420");
// MsgBox.Show(this,RxNorms.GetMmslCodeByRxCui("1000002")+" <-- should be blank");*/
//}
private void butNone_Click(object sender,EventArgs e) {
SelectedRxNorm=new RxNorm();
ListSelectedRxNorms=new List<RxNorm>();
DialogResult=DialogResult.OK;
}
///<summary></summary>
public static long Insert(RxNorm rxNorm) {
if(RemotingClient.RemotingRole==RemotingRole.ClientWeb) {
rxNorm.RxNormNum=Meth.GetLong(MethodBase.GetCurrentMethod(),rxNorm);
return rxNorm.RxNormNum;
}
return Crud.RxNormCrud.Insert(rxNorm);
}
public void AddCode(RxNorm rxNorm) {
subject4List.Add(new Subject3(new Value(rxNorm.RxCui,"2.16.840.1.113883.6.88","RxNorm",rxNorm.Description)));
subject4List[subject4List.Count-1].mainSearchCriteria.originalText=rxNorm.Description;
}
private void gridMain_CellDoubleClick(object sender,ODGridClickEventArgs e)
{
SelectedRxNorm=rxList[e.Row];
DialogResult=DialogResult.OK;
}