private void button1_Click(object sender, EventArgs e) { Convertor convertor = new Convertor(); convertor.Protease = Protease.Trypsin; convertor.FastaDatabaseFile = @"C:\Users\Derek\Documents\Compass Tests\OmssaConvertor\CONCAT_Uniprot_yeast_canonicalIsoforms_20jan2013.fasta"; convertor.MissedClevages = 3; convertor.FixedMods.Add(3); ThermoRawFile rawFile = new ThermoRawFile(@"C:\Users\Derek\Documents\Compass Tests\OmssaConvertor\10sep2013_yeast_control_2.raw"); convertor.Convert(@"C:\Users\Derek\Documents\Compass Tests\OmssaConvertor\10sep2013_yeast_control_2_ITMS_HCD30.00.csv", rawFile); }