public void UpdateBonds(CompleteOutputDescription latestCoDesc, IBond[] bonds)
{
if (scheme.HandlesBonds)
{
scheme.SetOutputDescription(coDesc);
DataFields[][] allStreams = new DataFields[1][];
IGeometryCreator[] schStreams = scheme.GetBondStreams();
GeomDataBufferStream[] geomStream = new GeomDataBufferStream[schStreams.Length];
for (int i = 0; i < geomStream.Length; i++)
{
allStreams[0] = schStreams[i].Fields;
GeomDataTransformer.CreateBufferStream(allStreams, out geomStream[i]);
}
// fill buffer stream
scheme.SetBondData(bonds, geomStream);
}
}
public void UpdateAtoms(CompleteOutputDescription coDesc, IAtom[] atoms)
{
if (scheme.HandlesAtoms)
{
scheme.SetOutputDescription(coDesc);
// pass throught scheme & effects
IGeometryCreator[] schStreams = scheme.GetAtomStreams();
DataFields[][] allStreams = new DataFields[1][];
GeomDataBufferStream[] geomStream = new GeomDataBufferStream[schStreams.Length];
for (int i = 0; i < geomStream.Length; i++)
{
allStreams[0] = schStreams[i].Fields;
GeomDataTransformer.CreateBufferStream(allStreams, out geomStream[i]);
}
// fill buffer stream
scheme.SetAtomData(atoms, geomStream);
}
}
public void OnNewDataSource(IAtom[] atoms, IBond[] bonds, Vector3 origin, Bounds3D bounds)
{
sceneGraph = new OcTree <ChemEntity>((int)bounds.radius * 2, -bounds.min);
/*screenEntities.Add(new BondAngle(device, atoms[0], atoms[1], atoms[2]));
* screenEntities[0].Init(device);
*
* postSceneWorldEntities.Add(new BoundingBoxEntity(new BoundingBox(bounds.min, bounds.max), false, Color.LightGray.ToArgb()));
* postSceneWorldEntities[0].Init(device);
* postSceneWorldEntities.Add(new SphereAxis3D());
* postSceneWorldEntities[1].Init(device);*/
sceneGraphEntities = sceneGraph.SceneItems;
// create molecule entities
foreach (IAtom atom in atoms)
{
AtomEntity aentity = AtomEntity.BuildEntity(atom);
sceneGraph.Insert(aentity);
/*ScreenLabelVSpaceEntity entity = new ScreenLabelVSpaceEntity(atom.ID + ":" + aentity.UId.ToString(), (Vector3)aentity.Position3D);
* entity.Init(device);
* screenEntities.Add(entity);*/
/*AtomSymbolEntity entity = new AtomSymbolEntity(aentity);
* entity.Init(device);
* postSceneViewEntities.Add(entity);*/
}
//foreach (IBond bond in bonds)
//{
//sceneGraph.Insert(new BondE);
//}
scheme.SetOutputDescription(coDesc);
scheme.SetupScene(origin, bounds.radius);
// pass throught scheme & effects
IGeometryCreator[] schStreams = scheme.GetAtomStreams();
DataFields[] efxFields = null;
//effect.DesiredData(out efxFields, false);
DataFields[][] allStreams = new DataFields[1 + (efxFields != null ? 1 : 0)][];
//if (efxFields != null)
// allStreams[1] = efxFields;
if (scheme.HandlesAtoms && atoms != null)
{
GeomDataBufferStream[] geomStream = new GeomDataBufferStream[schStreams.Length];
for (int i = 0; i < geomStream.Length; i++)
{
allStreams[0] = schStreams[i].Fields;
GeomDataTransformer.CreateBufferStream(allStreams, out geomStream[i]);
}
// fill buffer stream
scheme.SetAtomData(atoms, geomStream);
}
schStreams = scheme.GetBondStreams();
if (scheme.HandlesBonds && bonds != null)
{
GeomDataBufferStream[] geomStream = new GeomDataBufferStream[schStreams.Length];
for (int i = 0; i < geomStream.Length; i++)
{
allStreams[0] = schStreams[i].Fields;
GeomDataTransformer.CreateBufferStream(allStreams, out geomStream[i]);
}
// fill buffer stream
scheme.SetBondData(bonds, geomStream);
}
}