public AminoAcidInternal FeatureFunction(Pair <NEC, Hla> necAndHla)
{
string aminoAcidAsString = GetAminoAcid(Pos, TreatHlaAsPrefix, necAndHla.Second);
AminoAcidInternal aAminoAcidInternal = AminoAcidInternal.GetInstance(aminoAcidAsString);
return(aAminoAcidInternal);
}
public AminoAcidInternal FeatureFunction(Pair <NEC, Hla> necAndHla)
{
char chAminoAcid = necAndHla.First.E[Pos - 1];
AminoAcidInternal aAminoAcidInternal = AminoAcidInternal.GetInstance(chAminoAcid);
return(aAminoAcidInternal);
}
internal static AminoAcidInternal GetInstance(string sAminoAcid)
{
AminoAcidInternal aAminoAcidInternal = new AminoAcidInternal();
char aminoAcid = VirusCount.Biology.GetInstance().ThreeLetterAminoAcidAbbrevTo1Letter[sAminoAcid];
aAminoAcidInternal.AminoAcidAsChar = aminoAcid;
aAminoAcidInternal.AminoAcidAsString = sAminoAcid;
return(aAminoAcidInternal);
}
public override bool Equals(object obj)
{
AminoAcidInternal other = obj as AminoAcidInternal;
if (other == null)
{
return(false);
}
else
{
return(AminoAcidAsString == other.AminoAcidAsString);
}
}
public bool FeatureFunction(AminoAcidInternal aminoAcidInternal)
{
bool b = VirusCount.KmerProperties.GetInstance().DoesAminoAcidHaveProperty(aminoAcidInternal.AminoAcidAsString, Prop);
return(b);
}
public bool FeatureFunction(AminoAcidInternal aminoAcidInternal)
{
bool b = aminoAcidInternal.AminoAcidAsString == AminoAcid;
return(b);
}