/// <inheritdoc/>
public override int[][] Apply(int[][] graph, int length)
{
InitialCycles ic = InitialCycles.OfBiconnectedComponent(graph, length);
RelevantCycles rc = new RelevantCycles(ic);
return(new EssentialCycles(rc, ic).GetPaths());
}
/// <inheritdoc/>
public override int[][] Apply(int[][] graph, int length)
{
InitialCycles ic = InitialCycles.OfBiconnectedComponent(graph, length);
MinimumCycleBasis mcb = new MinimumCycleBasis(ic, true);
// As per the old aromaticity detector if the MCB/SSSR is made
// of 2 or 3 rings we check all rings for aromaticity - otherwise
// we just check the MCB/SSSR
if (mcb.Count > 3)
{
return(mcb.GetPaths());
}
else
{
return(All.Apply(graph, length));
}
}
/// <inheritdoc/>
public override int[][] Apply(int[][] graph, int length)
{
InitialCycles ic = InitialCycles.OfBiconnectedComponent(graph, length);
return(new EdgeShortCycles(ic).GetPaths());
}
/// <inheritdoc/>
public override int[][] Apply(int[][] graph, int length)
{
InitialCycles ic = InitialCycles.OfBiconnectedComponent(graph, length);
return(new TripletShortCycles(new MinimumCycleBasis(ic, true), false).GetPaths());
}
public virtual void Bioconnected_simpleCycle_limit_6()
{
InitialCycles ic = InitialCycles.OfBiconnectedComponent(Cyclohexane, 6);
Assert.AreEqual(1, ic.GetNumberOfCycles());
}