/// <summary>
/// Copying Fragment constructor.
/// </summary>
public Fragment(Fragment frag)
{
this.Name = frag.Name;
this.Sequence = new Sequence(frag.Sequence);
this.Source = frag.Source;
}
/// <summary>
/// Copying Fragment constructor.
/// </summary>
public Fragment(Fragment frag)
{
this.Name = frag.Name;
this.Sequence = new Sequence(frag.Sequence);
this.Source = frag.Source;
}
public void openProject(String file)
{
Sequence sequence = null;
parser = SequenceParsers.GenBank;
parser.Open(file);
sequence = (Sequence)parser.Parse().ToList()[0];
parser.Close();
Fragment project = new Fragment(file, "project", sequence);
GenBankMetadata meta = sequence.Metadata["GenBank"] as GenBankMetadata;
FragmentDict = new Dictionary<string, Fragment>();
foreach (var feat in meta.Features.MiscFeatures)
{
String subseq = project.GetString().Substring(feat.Location.LocationStart-1, feat.Location.LocationEnd - feat.Location.LocationStart + 1);
FragmentDict.Add(feat.StandardName, new Fragment(file, feat.StandardName, new Sequence(Alphabets.AmbiguousDNA, subseq)));
}
}
/// <summary>
/// FragmentViewModel constructor.
/// </summary>
/// <param name="m">Fragment model.</param>
public FragmentViewModel(Fragment m)
{
this.Model = m;
}