private void CreateDatabase()
{
if (!IsDatabaseSaved)
{
var saveDatabaseDialog = new SaveFileDialog();
saveDatabaseDialog.Filter = "Mass Tag Database (*.mtdb)|*.mtdb|All Files (*.*)|*.*";
saveDatabaseDialog.Title = "Save to MTDB";
if (RestoreDirectory == null)
{
RestoreDirectory = "C:\\";
}
saveDatabaseDialog.InitialDirectory = RestoreDirectory;
saveDatabaseDialog.RestoreDirectory = true;
if (saveDatabaseDialog.ShowDialog() == true)
{
AnalysisJobViewModel.SaveAnalysisDatabase(saveDatabaseDialog.FileName);
}
if (saveDatabaseDialog.FileName != "")
{
RestoreDirectory = Path.GetDirectoryName(saveDatabaseDialog.FileName);
SavedDatabasePath = saveDatabaseDialog.FileName;
IsDatabaseSaved = true;
}
}
else
{
var message = string.Format("Database already saved to {0}", SavedDatabasePath);
MessageBox.Show(message, "", MessageBoxButton.OK, MessageBoxImage.Warning);
}
}
public TargetTreeViewModel(AnalysisJobViewModel analysisJobViewModel)
{
m_targetDatabaseTreeNodeViewModels = new List <TargetDatabaseTreeNodeViewModel> {
new TargetDatabaseTreeNodeViewModel(analysisJobViewModel.Database)
};
m_proteinDatabaseTreeNodeViewModels = new List <ProteinDatabaseTreeNodeViewModel> {
new ProteinDatabaseTreeNodeViewModel(analysisJobViewModel.Database)
};
m_searchFilter = "";
}
private void Refresh()
{
if (AnalysisJobViewModel.Options.OptionsChanged)
{
MessageBoxResult refreshResult = MessageBox.Show(RefreshBoxText,
RefreshBoxCaption,
RefreshBoxButton,
RefreshBoxImage);
if (refreshResult == MessageBoxResult.Yes)
{
AnalysisJobViewModel.ProcessAnalysisTargets();
AnalysisJobViewModel.ProcessAnalysisDatabase();
UpdateDataViewModels();
AnalysisJobViewModel.Options.OptionsChanged = false;
}
}
else
{
MessageBox.Show("Datasets already current. \nNo need to refresh processing.", "", MessageBoxButton.OK, MessageBoxImage.Warning);
}
}
public StatPlotViewModel(AnalysisJobViewModel analysisJobViewModel)
{
StdevMassPlotModel = MakePlotModel("Stdev Mass");
StdevNetPlotModel = MakePlotModel("Stdev NET");
foreach (var axis in StdevMassPlotModel.Axes)
{
switch (axis.Position)
{
case AxisPosition.Left:
axis.Title = "Count";
break;
case AxisPosition.Bottom:
axis.Title = "Mass";
break;
}
}
StdevMassPlotModel.Series.Add(MakeStdevMassScatterSeries(analysisJobViewModel.Database));
foreach (var axis in StdevNetPlotModel.Axes)
{
switch (axis.Position)
{
case AxisPosition.Left:
axis.Title = "Count";
break;
case AxisPosition.Bottom:
axis.Title = "NET";
break;
}
}
StdevMassPlotModel.Series.Add(MakeStdevMassScatterSeries(analysisJobViewModel.Database));
StdevNetPlotModel.Series.Add(MakeStdevNetScatterSeries(analysisJobViewModel.Database));
}
public void UpdatePlotViewModel(AnalysisJobViewModel analysisJobViewModel)
{
AnalysisJobViewModel = analysisJobViewModel;
}
public DatasetPlotViewModel(AnalysisJobViewModel analysisJobViewModel)
{
m_SeriesColorDictionary = new Dictionary <string, Color>();
m_plotModels = new List <PlotModel>();
NETScanPlotModel = new PlotModel
{
Title = "Observed NET Vs. Scan",
IsLegendVisible = true,
LegendTitle = "LEGEND",
LegendPosition = LegendPosition.RightMiddle,
LegendPlacement = LegendPlacement.Outside,
LegendOrientation = LegendOrientation.Vertical,
LegendBorder = OxyColors.Black,
LegendSymbolPlacement = LegendSymbolPlacement.Left,
LegendBackground = OxyColors.Transparent,
};
NETScanPlotModel.Axes.Add(MakeLinerAxis(AxisPosition.Left));
NETScanPlotModel.Axes.Add(MakeLinerAxis(AxisPosition.Bottom));
foreach (var axis in NETScanPlotModel.Axes)
{
switch (axis.Position)
{
case AxisPosition.Left:
axis.Title = "Observed NET";
axis.AbsoluteMinimum = 0;
break;
case AxisPosition.Bottom:
axis.Title = "Scan";
axis.AbsoluteMinimum = 0;
break;
}
}
m_plotModels.Add(NETScanPlotModel);
MassScanPlotModel = new PlotModel
{
Title = "Monoisotopic Mass Vs. Scan",
IsLegendVisible = true,
LegendTitle = "LEGEND",
LegendPosition = LegendPosition.RightMiddle,
LegendPlacement = LegendPlacement.Outside,
LegendOrientation = LegendOrientation.Vertical,
LegendBorder = OxyColors.Black,
LegendSymbolPlacement = LegendSymbolPlacement.Left,
LegendBackground = OxyColors.Transparent,
};
MassScanPlotModel.Axes.Add(MakeLinerAxis(AxisPosition.Left));
MassScanPlotModel.Axes.Add(MakeLinerAxis(AxisPosition.Bottom));
foreach (var axis in MassScanPlotModel.Axes)
{
switch (axis.Position)
{
case AxisPosition.Left:
axis.Title = "MonoisotopicMass";
break;
case AxisPosition.Bottom:
axis.Title = "Scan";
axis.AbsoluteMinimum = 0;
break;
}
}
m_plotModels.Add(MassScanPlotModel);
ObservedPredictedPlotModel = new PlotModel
{
Title = "Predicted Net Vs. Observed Net",
IsLegendVisible = true,
LegendTitle = "LEGEND",
LegendPosition = LegendPosition.RightMiddle,
LegendPlacement = LegendPlacement.Outside,
LegendOrientation = LegendOrientation.Vertical,
LegendBorder = OxyColors.Black,
LegendSymbolPlacement = LegendSymbolPlacement.Left,
LegendBackground = OxyColors.Transparent,
};
ObservedPredictedPlotModel.Axes.Add(MakeLinerAxis(AxisPosition.Left));
ObservedPredictedPlotModel.Axes.Add(MakeLinerAxis(AxisPosition.Bottom));
foreach (var axis in ObservedPredictedPlotModel.Axes)
{
switch (axis.Position)
{
case AxisPosition.Left:
axis.Title = "Predicted Net";
break;
case AxisPosition.Bottom:
axis.Title = "Observed Net";
axis.AbsoluteMinimum = 0;
break;
}
}
m_plotModels.Add(ObservedPredictedPlotModel);
UpdatePlotViewModel(analysisJobViewModel);
}
public WorkspaceViewModel(AnalysisJobViewModel analysisJobViewModel)
{
AnalysisJobViewModel = analysisJobViewModel;
UpdateDataViewModels();
}