public void Load_IgnoresEmptyLines_Test()
{
using (var writer = new RawDataWriter(" "))
{
var genome = PrimitiveHelper.Load(writer.FullPath);
Assert.Empty(genome.Snp);
}
}
public void Load_IgnoresComments_Test()
{
using (var writer = new RawDataWriter(
"#rs12564807 1 734462 AA",
"#rs3131972 X 752721 GG"))
{
var genome = PrimitiveHelper.Load(writer.FullPath);
Assert.Empty(genome.Snp);
}
}
public void Load_CorrectlyLoadsRawData_Test()
{
using (var writer = new RawDataWriter(
"rs12564807 1 734462 AA",
"rs3131972 X 752721 GG",
"i4000690 MT 16518 G"))
{
var genome = PrimitiveHelper.Load(writer.FullPath);
Assert.Equal(3, genome.Snp.Count);
AssertSnp(genome.Snp[0], "rs12564807", Chromosome.One, 734462, "AA");
AssertSnp(genome.Snp[1], "rs3131972", Chromosome.X, 752721, "GG");
AssertSnp(genome.Snp[2], "i4000690", Chromosome.Mt, 16518, "G");
}
}
public void ParseChromosome_ReturnsCorrespondingChromosome_Test(Chromosome expected, string s)
{
Assert.Equal(expected, PrimitiveHelper.ParseChromosome(s));
}
