//---------------------------------------------------------------------
public override void Initialize()
{
Timestep = Parameters.Timestep;
time = Timestep;
CalibrateMode = Parameters.CalibrateMode;
CohortBiomass.SpinupMortalityFraction = Parameters.SpinupMortalityFraction;
//Initialize climate.
if (Parameters.ClimateConfigFile != null)
{
Climate.Initialize(Parameters.ClimateConfigFile, false, modelCore);
FutureClimateBaseYear = Climate.Future_MonthlyData.Keys.Min();
ClimateRegionData.Initialize(Parameters);
}
sufficientLight = Parameters.LightClassProbabilities;
SpeciesData.Initialize(Parameters);
EcoregionData.Initialize(Parameters);
DynamicInputs.Initialize(Parameters.DynamicInputFile, false);
SpeciesData.ChangeDynamicParameters(0); // Year 0
FireEffects.Initialize(Parameters);
//Outputs.Initialize(parameters);
MetadataHandler.InitializeMetadata(summaryLogFileName);
// Cohorts must be created before the base class is initialized
// because the base class' reproduction module uses the core's
// SuccessionCohorts property in its Initialization method.
Landis.Library.BiomassCohorts.Cohorts.Initialize(Timestep, new CohortBiomass());
// Initialize Reproduction routines:
Reproduction.SufficientResources = SufficientLight;
Reproduction.Establish = Establish;
Reproduction.AddNewCohort = AddNewCohort;
Reproduction.MaturePresent = MaturePresent;
Reproduction.PlantingEstablish = PlantingEstablish;
base.Initialize(modelCore, Parameters.SeedAlgorithm);
InitialBiomass.Initialize(Timestep);
Landis.Library.BiomassCohorts.Cohort.DeathEvent += CohortTotalMortality;
Landis.Library.BiomassCohorts.Cohort.PartialDeathEvent += CohortPartialMortality;
InitializeSites(Parameters.InitialCommunities, Parameters.InitialCommunitiesMap, modelCore);
}
//---------------------------------------------------------------------
/// <summary>
/// Grows all cohorts at a site for a specified number of years. The
/// dead pools at the site also decompose for the given time period.
/// </summary>
public static void GrowCohorts(
ActiveSite site,
int years,
bool isSuccessionTimestep)
{
//PlugIn.ModelCore.Log.WriteLine("years = {0}, successionTS = {1}.", years, successionTimestep.Value);
for (int y = 1; y <= years; ++y)
{
if (PlugIn.ModelCore.CurrentTime > 0)
{
SpeciesData.ChangeDynamicParameters(PlugIn.ModelCore.CurrentTime + y - 1);
}
SiteVars.ResetAnnualValues(site);
CohortBiomass.SubYear = y - 1;
SiteVars.Cohorts[site].Grow(site, (y == years && isSuccessionTimestep));
SiteVars.WoodyDebris[site].Decompose();
SiteVars.Litter[site].Decompose();
}
}