public OutputHistogramCohort(string filenametemplate, string label, int NrOfCohorts)
{
FileContent = new List <string>();
this.NrOfCohorts = NrOfCohorts;
FileName = FileNames.ReplaceTemplateVars(filenametemplate, "", PlugIn.ModelCore.CurrentTime).Replace(".img", "Histogram.csv").Replace("timestep", "AllYears");
this.label = label;
}
public void PrintLabels(string MapNameTemplate, ISpecies Species)
{
string FileName = System.IO.Path.ChangeExtension(FileNames.ReplaceTemplateVars(MapNameTemplate.Replace("{timestep}", "Label"), Species.Name), "txt");
List <string> Content = new List <string>();
foreach (var value in Enum.GetValues(typeof(values)))
{
Content.Add((int)value + "\t" + value.ToString() + "\n");
}
System.IO.File.WriteAllLines(FileName, Content.ToArray());
}
public OutputTableEcoregions(string MapNameTemplate)
{
FileName = FileNames.ReplaceTemplateVars(MapNameTemplate).Replace(".img", "eco.txt").Replace(".gis", "eco.txt");
FileNames.MakeFolders(FileName);
string hdr = "Time\t";
foreach (IEcoregion e in PlugIn.ModelCore.Ecoregions)
{
hdr += e.Name + "\t";
}
FileContent.Add(hdr);
}
public OutputTableEcoregions(string MapNameTemplate)
{
FileName = FileNames.ReplaceTemplateVars(MapNameTemplate).Replace(".img", "-eco.csv").Replace(".gis", "-eco.csv").Replace("{timestep}", "AllYears");
FileNames.MakeFolders(FileName);
string hdr = "Time";
foreach (IEcoregion e in PlugIn.ModelCore.Ecoregions)
{
hdr += ", " + e.Name;
}
FileContent.Add(hdr);
}
public static void Write <T>(string MapNameTemplate, string units, int TStep, ISiteVar <Landis.Library.Parameters.Species.AuxParm <T> > Values)
{
string FileName = FileNames.ReplaceTemplateVars(MapNameTemplate).Replace(".img", ".txt");
if (PlugIn.ModelCore.CurrentTime == 0)
{
FileNames.MakeFolders(FileName);
System.IO.File.WriteAllLines(FileName, new string[] { Header(units) });
}
AuxParm <ulong> Values_spc = new AuxParm <ulong>(PlugIn.ModelCore.Species);
AuxParm <ulong> Values_cnt = new AuxParm <ulong>(PlugIn.ModelCore.Species);
foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
{
foreach (ISpecies spc in PlugIn.ModelCore.Species)
{
if (typeof(T) == typeof(bool))
{
if (Values[site][spc].ToString() == bool.TrueString)
{
Values_spc[spc]++;
}
}
else
{
ulong numeric = ulong.Parse(Values[site][spc].ToString());
Values_spc[spc] += numeric;
}
Values_cnt[spc]++;
}
}
string line = TStep + "\t";
foreach (ISpecies spc in PlugIn.ModelCore.Species)
{
line += Values_spc[spc] / (float)Values_cnt[spc] + "\t";
}
System.IO.StreamWriter sw = new System.IO.StreamWriter(FileName, true);
sw.WriteLine(line);
sw.Close();
}
public static void WriteUpdate(string MapNameTemplate, int year, AuxParm <int> values)
{
string FileName = FileNames.ReplaceTemplateVars(MapNameTemplate).Replace(".img", ".csv").Replace(".gis", ".csv");
if (year == 0)
{
FileNames.MakeFolders(FileName);
System.IO.File.WriteAllLines(FileName, new string[] { Header });
}
string line = year.ToString();
foreach (ISpecies species in PlugIn.SelectedSpecies)
{
line += ", " + values[species];
}
System.IO.StreamWriter sw = new System.IO.StreamWriter(FileName, true);
sw.WriteLine(line);
sw.Close();
}
private static void WriteMonthlyOutput(ISiteVar <int[]> montly, string MapNameTemplate)
{
string[] months = new string[] { "jan", "feb", "mar", "apr", "may", "jun", "jul", "aug", "sep", "okt", "nov", "dec" };
for (int mo = 0; mo < months.Count(); mo++)
{
ISiteVar <int> monthlyValue = PlugIn.ModelCore.Landscape.NewSiteVar <int>();
foreach (ActiveSite site in PlugIn.modelCore.Landscape)
{
monthlyValue[site] = montly[site][mo];
}
string FileName = FileNames.ReplaceTemplateVars(MapNameTemplate, "", PlugIn.ModelCore.CurrentTime);
FileName = System.IO.Path.ChangeExtension(FileName, null) + months[mo] + System.IO.Path.GetExtension(FileName);
new OutputMapSiteVar <int, int>(FileName, monthlyValue, o => o);
}
}
public static void Write <T>(string MapNameTemplate, string units, int TStep, Landis.Library.Parameters.Species.AuxParm <T> Values)
{
string FileName = FileNames.ReplaceTemplateVars(MapNameTemplate).Replace(".img", ".txt");
if (PlugIn.ModelCore.CurrentTime == 0)
{
FileNames.MakeFolders(FileName);
System.IO.File.WriteAllLines(FileName, new string[] { Header(units) });
}
string line = TStep + "\t";
foreach (ISpecies spc in PlugIn.ModelCore.Species)
{
line += Values[spc] + "\t";
}
System.IO.StreamWriter sw = new System.IO.StreamWriter(FileName, true);
sw.WriteLine(line);
sw.Close();
}
public OutputMapSpecies(ISiteVar <int> values, ISpecies species, string MapNameTemplate)
{
FileName = FileNames.ReplaceTemplateVars(MapNameTemplate, species.Name, PlugIn.ModelCore.CurrentTime);
Console.WriteLine(" Writing {0} map to {1} ...", species.Name, FileName);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(FileName, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)values[site];
}
else
{
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
public static void InitializeMetadata(int Timestep, OutputVariable LAI, OutputVariable Biomass, OutputVariable AbovegroundBiomass, OutputVariable EstablishmentProbability, ISiteVar <Landis.Library.Parameters.Species.AuxParm <bool> > SpeciesWasThere, OutputVariable AnnualPsn, OutputVariable BelowGround, OutputVariable CohortsPerSpc, OutputVariable Water, OutputVariable SubCanopyPAR, OutputVariable NonWoodyDebris, OutputVariable WoodyDebris, OutputVariable AgeDistribution, OutputVariable MonthlyFolResp, OutputVariable MonthlyGrossPsn, OutputVariable MonthlyNetPsn, OutputVariable MonthlyMaintResp, OutputVariable SpeciesEstablishment, ISiteVar <Library.Parameters.Species.AuxParm <int> > LastBiom, OutputAggregatedTable overalloutputs, string OutputTableMap)
{
ScenarioReplicationMetadata scenRep = new ScenarioReplicationMetadata()
{
RasterOutCellArea = PlugIn.ModelCore.CellArea,
TimeMin = PlugIn.ModelCore.StartTime,
TimeMax = PlugIn.ModelCore.EndTime,
};
Extension = new ExtensionMetadata(PlugIn.ModelCore)
//Extension = new ExtensionMetadata()
{
Name = PlugIn.ExtensionName,
TimeInterval = Timestep,
ScenarioReplicationMetadata = scenRep
};
//---------------------------------------
// table outputs:
//---------------------------------------
if (overalloutputs != null)
{
PlugIn.ModelCore.UI.WriteLine(" Generating summary table...");
CreateDirectory(OutputTableMap);
OutputMetadata tblOut_OverallOutputs = new OutputMetadata()
{
Type = OutputType.Table,
Name = Path.GetFileName(OutputTableMap),
FilePath = OutputTableMap,
Map_DataType = MapDataType.Continuous,
Visualize = true,
};
tblOut_OverallOutputs.RetriveFields(typeof(OutputAggregatedTable));
Extension.OutputMetadatas.Add(tblOut_OverallOutputs);
}
//---------------------------------------
// map outputs:
//---------------------------------------
//OutputMetadata mapOut_BiomassRemoved = new OutputMetadata()
//{
// Type = OutputType.Map,
// Name = "biomass removed",
// FilePath = @HarvestMapName,
// Map_DataType = MapDataType.Continuous,
// Map_Unit = FieldUnits.Mg_ha,
// Visualize = true,
//};
//Extension.OutputMetadatas.Add(mapOut_BiomassRemoved);
if (LAI != null)
{
OutputMetadata mapOut_LAI = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(LAI.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(LAI.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_LAI);
}
if (Biomass != null)
{
foreach (ISpecies spc in PlugIn.SelectedSpecies)
{
OutputMetadata mapOut_Biomass = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(Biomass.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(Biomass.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_Biomass);
}
}
if (AbovegroundBiomass != null)
{
foreach (ISpecies spc in PlugIn.SelectedSpecies)
{
OutputMetadata mapOut_AbvBiomass = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(AbovegroundBiomass.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(AbovegroundBiomass.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_AbvBiomass);
}
}
if (MonthlyFolResp != null)
{
OutputMetadata mapOut_Monthly = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(MonthlyFolResp.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(MonthlyFolResp.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_Monthly);
}
if (MonthlyGrossPsn != null)
{
OutputMetadata mapOut_Monthly = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(MonthlyGrossPsn.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(MonthlyGrossPsn.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_Monthly);
}
if (MonthlyNetPsn != null)
{
OutputMetadata mapOut_Monthly = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(MonthlyNetPsn.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(MonthlyNetPsn.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_Monthly);
}
if (MonthlyMaintResp != null)
{
OutputMetadata mapOut_Monthly = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(MonthlyMaintResp.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(MonthlyMaintResp.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_Monthly);
}
if (BelowGround != null)
{
OutputMetadata mapOut_BelowGround = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(BelowGround.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(BelowGround.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_BelowGround);
}
if (CohortsPerSpc != null)
{
foreach (ISpecies spc in PlugIn.ModelCore.Species)
{
OutputMetadata mapOut_LAI = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(CohortsPerSpc.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(CohortsPerSpc.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_LAI);
}
}
if (EstablishmentProbability != null)
{
foreach (ISpecies spc in PlugIn.SelectedSpecies)
{
OutputMetadata mapOut_EProb = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(EstablishmentProbability.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(EstablishmentProbability.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_EProb);
}
}
if (SpeciesEstablishment != null)
{
if (SpeciesWasThere != null)
{
foreach (ISpecies spc in PlugIn.ModelCore.Species)
{
OutputMetadata mapOut_SpeciesE = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(SpeciesEstablishment.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(SpeciesEstablishment.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_SpeciesE);
}
}
OutputMetadata mapOut_SpeciesE2 = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(SpeciesEstablishment.MapNameTemplate).Replace(".img", ".txt"),
FilePath = FileNames.ReplaceTemplateVars(SpeciesEstablishment.MapNameTemplate).Replace(".img", ".txt"),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_SpeciesE2);
}
if (AnnualPsn != null)
{
if (LastBiom != null)
{
foreach (ISpecies spc in PlugIn.ModelCore.Species)
{
OutputMetadata mapOut_AnnualPsn = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(AnnualPsn.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(AnnualPsn.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_AnnualPsn);
}
}
}
if (Water != null)
{
OutputMetadata mapOut_Water = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(Water.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(Water.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_Water);
}
if (SubCanopyPAR != null)
{
OutputMetadata mapOut_SubCanopyPAR = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(SubCanopyPAR.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(SubCanopyPAR.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_SubCanopyPAR);
}
if (NonWoodyDebris != null)
{
OutputMetadata mapOut_NonWoodyDebris = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(NonWoodyDebris.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(NonWoodyDebris.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_NonWoodyDebris);
}
if (WoodyDebris != null)
{
OutputMetadata mapOut_WoodyDebris = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(WoodyDebris.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(WoodyDebris.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_WoodyDebris);
}
if (AgeDistribution != null)
{
OutputMetadata mapOut_AgeDistribution = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(AgeDistribution.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(AgeDistribution.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_AgeDistribution);
}
//---------------------------------------
MetadataProvider mp = new MetadataProvider(Extension);
mp.WriteMetadataToXMLFile("Metadata", Extension.Name, Extension.Name);
}
public OutputAggregatedTable(string Template)
{
FileName = FileNames.ReplaceTemplateVars(Template, "Overall", PlugIn.ModelCore.CurrentTime).Replace(".img", ".csv");
FileContent = new List <string>();
FileContent.Add("Time" + ", " + "#Cohorts" + ", " + "AverageAge" + ", " + "AverageB(g/m2)" + ", " + "AverageLAI(m2)" + ", " + "AverageWater(mm)" + ", " + "SubCanopyPAR(W/m2)" + ", " + "Litter(kgDW/m2)" + ", " + "WoodyDebris(kgDW/m2)" + ", " + "AverageBelowGround(g/m2)" + ", " + "AverageFoliage(g/m2)" + ", " + "AverageNSC(gC/m2)" + ", " + "AverageAET(mm)");
}
public override void Run()
{
if (LAI != null)
{
System.Console.WriteLine("Updating output variable: LAI");
// Total LAI per site
ISiteVar <byte> values = cohorts.GetIsiteVar(o => o.CanopyLAImax);
string FileName = FileNames.ReplaceTemplateVars(LAI.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime);
new OutputMapSiteVar <byte, byte>(FileName, values, o => o);
// Values per species each time step
LAI.output_table_ecoregions.WriteUpdate(PlugIn.ModelCore.CurrentTime, values);
}
if (Biomass != null)
{
System.Console.WriteLine("Updating output variable: Biomass");
ISiteVar <Landis.Library.Parameters.Species.AuxParm <int> > Biom = cohorts.GetIsiteVar(o => o.BiomassPerSpecies);
foreach (ISpecies spc in PlugIn.SelectedSpecies)
{
ISiteVar <int> Biom_spc = modelCore.Landscape.NewSiteVar <int>();
foreach (ActiveSite site in PlugIn.modelCore.Landscape)
{
Biom_spc[site] = Biom[site][spc];
}
new OutputMapSpecies(Biom_spc, spc, Biomass.MapNameTemplate);
}
OutputFilePerTStepPerSpecies.Write <int>(Biomass.MapNameTemplate, Biomass.units, PlugIn.ModelCore.CurrentTime, Biom);
ISiteVar <float> Biomass_site = cohorts.GetIsiteVar(x => x.BiomassSum);
Biomass.output_table_ecoregions.WriteUpdate <float>(PlugIn.ModelCore.CurrentTime, Biomass_site);
}
if (AbovegroundBiomass != null)
{
System.Console.WriteLine("Updating output variable: Aboveground Biomass");
ISiteVar <Landis.Library.Parameters.Species.AuxParm <int> > AGBiom = cohorts.GetIsiteVar(o => o.AbovegroundBiomassPerSpecies);
foreach (ISpecies spc in PlugIn.SelectedSpecies)
{
ISiteVar <int> AGBiom_spc = modelCore.Landscape.NewSiteVar <int>();
foreach (ActiveSite site in PlugIn.modelCore.Landscape)
{
AGBiom_spc[site] = AGBiom[site][spc];
}
new OutputMapSpecies(AGBiom_spc, spc, AbovegroundBiomass.MapNameTemplate);
}
OutputFilePerTStepPerSpecies.Write <int>(AbovegroundBiomass.MapNameTemplate, AbovegroundBiomass.units, PlugIn.ModelCore.CurrentTime, AGBiom);
ISiteVar <float> AGBiomass_site = cohorts.GetIsiteVar(x => x.AbovegroundBiomassSum);
AbovegroundBiomass.output_table_ecoregions.WriteUpdate <float>(PlugIn.ModelCore.CurrentTime, AGBiomass_site);
}
if (WoodySenescence != null)
{
System.Console.WriteLine("Updating output variable: Woody Senescence");
ISiteVar <Landis.Library.Parameters.Species.AuxParm <int> > Senes = cohorts.GetIsiteVar(o => o.WoodySenescencePerSpecies);
/*
* foreach (ISpecies spc in PlugIn.SelectedSpecies)
* {
* ISiteVar<int> Senes_spc = modelCore.Landscape.NewSiteVar<int>();
*
* foreach (ActiveSite site in PlugIn.modelCore.Landscape)
* {
* Senes_spc[site] = Senes[site][spc];
*
* }
*
* new OutputMapSpecies(Senes_spc, spc, WoodySenescence.MapNameTemplate);
* }
*/
OutputFilePerTStepPerSpecies.Write <int>(WoodySenescence.MapNameTemplate, WoodySenescence.units, PlugIn.ModelCore.CurrentTime, Senes);
ISiteVar <float> Senescence_site = cohorts.GetIsiteVar(x => x.WoodySenescenceSum);
WoodySenescence.output_table_ecoregions.WriteUpdate <float>(PlugIn.ModelCore.CurrentTime, Senescence_site);
}
if (FoliageSenescence != null)
{
System.Console.WriteLine("Updating output variable: Foliage Senescence");
ISiteVar <Landis.Library.Parameters.Species.AuxParm <int> > Senes = cohorts.GetIsiteVar(o => o.FoliageSenescencePerSpecies);
/*foreach (ISpecies spc in PlugIn.SelectedSpecies)
* {
* ISiteVar<int> Senes_spc = modelCore.Landscape.NewSiteVar<int>();
*
* foreach (ActiveSite site in PlugIn.modelCore.Landscape)
* {
* Senes_spc[site] = Senes[site][spc];
* }
*
* new OutputMapSpecies(Senes_spc, spc, FoliageSenescence.MapNameTemplate);
* }
*/
OutputFilePerTStepPerSpecies.Write <int>(FoliageSenescence.MapNameTemplate, FoliageSenescence.units, PlugIn.ModelCore.CurrentTime, Senes);
ISiteVar <float> Senescence_site = cohorts.GetIsiteVar(x => x.FoliageSenescenceSum);
FoliageSenescence.output_table_ecoregions.WriteUpdate <float>(PlugIn.ModelCore.CurrentTime, Senescence_site);
}
if (AETAvg != null)
{
ISiteVar <float> AET_site = cohorts.GetIsiteVar(x => x.AETSum);
AETAvg.output_table_ecoregions.WriteUpdate <float>(PlugIn.ModelCore.CurrentTime, AET_site);
}
if (MonthlyFolResp != null)
{
ISiteVar <int[]> monthlyFolResp = cohorts.GetIsiteVar(site => site.FolResp);
WriteMonthlyOutput(monthlyFolResp, MonthlyFolResp.MapNameTemplate);
}
if (MonthlyGrossPsn != null)
{
ISiteVar <int[]> monthlyGrossPsn = cohorts.GetIsiteVar(site => site.GrossPsn);
WriteMonthlyOutput(monthlyGrossPsn, MonthlyGrossPsn.MapNameTemplate);
}
if (MonthlyNetPsn != null)
{
ISiteVar <int[]> monthlyNetPsn = cohorts.GetIsiteVar(site => site.NetPsn);
WriteMonthlyOutput(monthlyNetPsn, MonthlyNetPsn.MapNameTemplate);
}
if (MonthlyMaintResp != null)
{
ISiteVar <int[]> monthlyMaintResp = cohorts.GetIsiteVar(site => site.MaintResp);
WriteMonthlyOutput(monthlyMaintResp, MonthlyMaintResp.MapNameTemplate);
}
if (BelowGround != null)
{
System.Console.WriteLine("Updating output variable: BelowGround");
ISiteVar <uint> values = cohorts.GetIsiteVar(o => o.BelowGroundBiomass);
string FileName = FileNames.ReplaceTemplateVars(BelowGround.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime);
new OutputMapSiteVar <uint, uint>(FileName, values, o => o);
}
if (CohortsPerSpc != null)
{
System.Console.WriteLine("Updating output variable: CohortsPerSpc");
// Nr of Cohorts per site and per species
ISiteVar <Landis.Library.Parameters.Species.AuxParm <int> > cps = cohorts.GetIsiteVar(x => x.CohortCountPerSpecies);
new OutputHistogramCohort <int>(CohortsPerSpc.MapNameTemplate, "CohortsPerSpcPerSite", 10).WriteOutputHist(cps);
foreach (ISpecies spc in PlugIn.SelectedSpecies)
{
string FileName = FileNames.ReplaceTemplateVars(CohortsPerSpc.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime);
new OutputMapSiteVar <Landis.Library.Parameters.Species.AuxParm <int>, int>(FileName, cps, o => o[spc]);
}
OutputFilePerTStepPerSpecies.Write <int>(CohortsPerSpc.MapNameTemplate, CohortsPerSpc.units, PlugIn.ModelCore.CurrentTime, cps);
}
if (EstablishmentProbability != null)
{
System.Console.WriteLine("Updating output variable: EstablishmentProbability");
ISiteVar <Landis.Library.Parameters.Species.AuxParm <byte> > pest = (ISiteVar <Landis.Library.Parameters.Species.AuxParm <byte> >)cohorts.GetIsiteVar(o => o.EstablishmentProbability.Probability);
foreach (ISpecies spc in PlugIn.SelectedSpecies)
{
ISiteVar <int> _pest = modelCore.Landscape.NewSiteVar <int>();
foreach (ActiveSite site in PlugIn.modelCore.Landscape)
{
_pest[site] = pest[site][spc];
}
new OutputMapSpecies(_pest, spc, EstablishmentProbability.MapNameTemplate);
}
}
if (SpeciesEstablishment != null)
{
System.Console.WriteLine("Updating output variable: SpeciesEstablishment");
ISiteVar <Landis.Library.Parameters.Species.AuxParm <bool> > SpeciesIsThere = cohorts.GetIsiteVar(o => o.SpeciesPresent);
if (SpeciesWasThere != null)
{
foreach (ISpecies spc in PlugIn.modelCore.Species)
{
ISiteVar <int> comp = PlugIn.modelCore.Landscape.NewSiteVar <int>();
MapComparison m = new MapComparison();
foreach (ActiveSite site in PlugIn.modelCore.Landscape)
{
if (SpeciesWasThere[site] == null)
{
SpeciesWasThere[site] = new Library.Parameters.Species.AuxParm <bool>(PlugIn.modelCore.Species);
}
comp[site] = m[SpeciesWasThere[site][spc], SpeciesIsThere[site][spc]];
SpeciesWasThere[site][spc] = SpeciesIsThere[site][spc];
}
OutputMapSpecies output_map = new OutputMapSpecies(comp, spc, SpeciesEstablishment.MapNameTemplate);
// map label text
m.PrintLabels(SpeciesEstablishment.MapNameTemplate, spc);
}
}
else
{
SpeciesWasThere = modelCore.Landscape.NewSiteVar <Landis.Library.Parameters.Species.AuxParm <bool> >();
foreach (ActiveSite site in PlugIn.modelCore.Landscape)
{
SpeciesWasThere[site] = new Library.Parameters.Species.AuxParm <bool>(PlugIn.modelCore.Species);
}
}
ISiteVar <Landis.Library.Parameters.Species.AuxParm <bool> > Established_spc = cohorts.GetIsiteVar(x => x.SpeciesPresent);
Landis.Library.Parameters.Species.AuxParm <int> Est_Sum = new Landis.Library.Parameters.Species.AuxParm <int>(PlugIn.modelCore.Species);
foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
{
foreach (ISpecies spc in PlugIn.modelCore.Species)
{
if (Established_spc[site][spc] == true)
{
Est_Sum[spc]++;
}
}
}
OutputFilePerTStepPerSpecies.Write <int>(SpeciesEstablishment.MapNameTemplate, SpeciesEstablishment.units, PlugIn.ModelCore.CurrentTime, Est_Sum);
}
if (AnnualPsn != null)
{
System.Console.WriteLine("Updating output variable: AnnualPsn");
ISiteVar <Landis.Library.Parameters.Species.AuxParm <int> > Biom = cohorts.GetIsiteVar(o => o.BiomassPerSpecies);
if (LastBiom != null)
{
foreach (ISpecies spc in PlugIn.modelCore.Species)
{
ISiteVar <int> comp = PlugIn.modelCore.Landscape.NewSiteVar <int>();
MapComparison m = new MapComparison();
foreach (ActiveSite site in PlugIn.modelCore.Landscape)
{
if (LastBiom[site] == null)
{
LastBiom[site] = new Library.Parameters.Species.AuxParm <int>(PlugIn.modelCore.Species);
}
comp[site] = Biom[site][spc] - LastBiom[site][spc];
LastBiom[site][spc] = Biom[site][spc];
}
OutputMapSpecies output_map = new OutputMapSpecies(comp, spc, AnnualPsn.MapNameTemplate);
}
}
else
{
LastBiom = modelCore.Landscape.NewSiteVar <Landis.Library.Parameters.Species.AuxParm <int> >();
foreach (ActiveSite site in PlugIn.modelCore.Landscape)
{
LastBiom[site] = new Library.Parameters.Species.AuxParm <int>(PlugIn.modelCore.Species);
}
}
}
if (Water != null)
{
System.Console.WriteLine("Updating output variable: Water");
ISiteVar <ushort> Water_site = cohorts.GetIsiteVar(x => x.WaterMax);
string FileName = FileNames.ReplaceTemplateVars(Water.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime);
new OutputMapSiteVar <ushort, ushort>(FileName, Water_site, o => o);
Water.output_table_ecoregions.WriteUpdate(PlugIn.ModelCore.CurrentTime, Water_site);
}
if (SubCanopyPAR != null)
{
System.Console.WriteLine("Updating output variable: SubCanopyPAR");
ISiteVar <float> SubCanopyRadiation = cohorts.GetIsiteVar(x => x.SubCanopyParMAX);
string FileName = FileNames.ReplaceTemplateVars(SubCanopyPAR.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime);
new OutputMapSiteVar <float, float>(FileName, SubCanopyRadiation, o => o);
}
if (NonWoodyDebris != null)
{
System.Console.WriteLine("Updating output variable: NonWoodyDebris");
ISiteVar <double> Litter = cohorts.GetIsiteVar(x => x.Litter);
string FileName = FileNames.ReplaceTemplateVars(NonWoodyDebris.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime);
new OutputMapSiteVar <double, double>(FileName, Litter, o => o);
}
if (WoodyDebris != null)
{
System.Console.WriteLine("Updating output variable: WoodyDebris");
ISiteVar <double> woody_debris = cohorts.GetIsiteVar(x => x.WoodyDebris);
string FileName = FileNames.ReplaceTemplateVars(WoodyDebris.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime);
new OutputMapSiteVar <double, double>(FileName, woody_debris, o => o);
}
if (AgeDistribution != null)
{
System.Console.WriteLine("Updating output variable: AgeDistribution");
ISiteVar <Landis.Library.Parameters.Species.AuxParm <List <ushort> > > values = cohorts.GetIsiteVar(o => o.CohortAges);
new OutputHistogramCohort <ushort>(AgeDistribution.MapNameTemplate, "NrOfCohortsAtAge", 10).WriteOutputHist(values);
System.Console.WriteLine("Updating output variable: MaxAges");
ISiteVar <int> maxage = cohorts.GetIsiteVar(x => x.AgeMax);
string FileName = FileNames.ReplaceTemplateVars(AgeDistribution.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime);
new OutputMapSiteVar <int, int>(FileName, maxage, o => o);
}
if (overalloutputs != null)
{
System.Console.WriteLine("Updating output variable: overalloutputs");
OutputAggregatedTable.WriteNrOfCohortsBalance();
}
}