//---------------------------------------------------------------------
/// <summary>
/// Initializes the extension with a data file.
/// </summary>
public override void Initialize()
{
Timestep = parameters.Timestep;
mapNameTemplate = parameters.MapNamesTemplate;
srdMapNames = parameters.SRDMapNames;
nrdMapNames = parameters.NRDMapNames;
SiteVars.Initialize(modelCore);
manyAgentParameters = parameters.ManyAgentParameters;
foreach (IAgent activeAgent in manyAgentParameters)
{
if (activeAgent == null)
{
PlugIn.ModelCore.UI.WriteLine("Agent Parameters NOT loading correctly.");
}
activeAgent.TimeToNextEpidemic = TimeToNext(activeAgent, Timestep);
int i = 0;
activeAgent.DispersalNeighbors
= GetDispersalNeighborhood(activeAgent, Timestep);
if (activeAgent.DispersalNeighbors != null)
{
foreach (RelativeLocation reloc in activeAgent.DispersalNeighbors)
{
i++;
}
PlugIn.ModelCore.UI.WriteLine("Dispersal Neighborhood = {0} neighbors.", i);
}
i = 0;
activeAgent.ResourceNeighbors = GetResourceNeighborhood(activeAgent);
if (activeAgent.ResourceNeighbors != null)
{
foreach (RelativeLocationWeighted reloc in activeAgent.ResourceNeighbors)
{
i++;
}
PlugIn.ModelCore.UI.WriteLine("Resource Neighborhood = {0} neighbors.", i);
}
}
string logFileName = parameters.LogFileName;
PlugIn.ModelCore.UI.WriteLine("Opening BDA log file \"{0}\" ...", logFileName);
log = Landis.Data.CreateTextFile(logFileName);
log.AutoFlush = true;
log.Write("CurrentTime, ROS, AgentName, NumCohortsKilled, NumSitesDamaged, MeanSeverity");
log.WriteLine("");
}
//---------------------------------------------------------------------
/// <summary>
/// Initializes the extension with a data file.
/// </summary>
public override void Initialize()
{
reinitialized = false;
MetadataHandler.InitializeMetadata(parameters.Timestep,
parameters.MapNamesTemplate,
parameters.SRDMapNames,
parameters.NRDMapNames,
parameters.LogFileName,
parameters.ManyAgentParameters,
ModelCore);
Timestep = parameters.Timestep;
mapNameTemplate = parameters.MapNamesTemplate;
srdMapNames = parameters.SRDMapNames;
nrdMapNames = parameters.NRDMapNames;
vulnMapNames = parameters.BDPMapNames;
SiteVars.Initialize(modelCore);
manyAgentParameters = parameters.ManyAgentParameters;
foreach (IAgent activeAgent in manyAgentParameters)
{
if (activeAgent == null)
{
PlugIn.ModelCore.UI.WriteLine("Agent Parameters NOT loading correctly.");
}
activeAgent.TimeToNextEpidemic = TimeToNext(activeAgent, Timestep) + activeAgent.StartYear;
int timeOfNext = PlugIn.ModelCore.CurrentTime + activeAgent.TimeToNextEpidemic - activeAgent.TimeSinceLastEpidemic;
if (timeOfNext < Timestep)
{
timeOfNext = Timestep;
}
if (timeOfNext < activeAgent.StartYear)
{
timeOfNext = activeAgent.StartYear;
}
SiteVars.TimeOfNext.ActiveSiteValues = timeOfNext;
int i = 0;
activeAgent.DispersalNeighbors
= GetDispersalNeighborhood(activeAgent, Timestep);
if (activeAgent.DispersalNeighbors != null)
{
foreach (RelativeLocation reloc in activeAgent.DispersalNeighbors)
{
i++;
}
PlugIn.ModelCore.UI.WriteLine("Dispersal Neighborhood = {0} neighbors.", i);
}
i = 0;
activeAgent.ResourceNeighbors = GetResourceNeighborhood(activeAgent);
if (activeAgent.ResourceNeighbors != null)
{
foreach (RelativeLocationWeighted reloc in activeAgent.ResourceNeighbors)
{
i++;
}
PlugIn.ModelCore.UI.WriteLine("Resource Neighborhood = {0} neighbors.", i);
}
if (activeAgent.RandFunc == OutbreakPattern.Climate)
{
if (activeAgent.ClimateVarSource != "Library")
{
DataTable weatherTable = ClimateData.ReadWeatherFile(activeAgent.ClimateVarSource);
activeAgent.ClimateDataTable = weatherTable;
}
}
}
//string logFileName = parameters.LogFileName;
//PlugIn.ModelCore.UI.WriteLine("Opening BDA log file \"{0}\" ...", logFileName);
//log = PlugIn.ModelCore.CreateTextFile(logFileName);
//log.AutoFlush = true;
//log.Write("CurrentTime, ROS, AgentName, NumCohortsKilled, NumSitesDamaged, MeanSeverity");
//log.WriteLine("");
}
public new void InitializePhase2()
{
SiteVars.InitializeTimeOfLastDisturbances();
reinitialized = true;
}
//---------------------------------------------------------------------
/// <summary>
/// Initializes the extension with a data file.
/// </summary>
public override void Initialize()
{
Timestep = parameters.Timestep;
mapNameTemplate = parameters.MapNamesTemplate;
srdMapNames = parameters.SRDMapNames;
nrdMapNames = parameters.NRDMapNames;
vulnMapNames = parameters.BDPMapNames;
SiteVars.Initialize(modelCore);
manyAgentParameters = parameters.ManyAgentParameters;
foreach (IAgent activeAgent in manyAgentParameters)
{
if (activeAgent == null)
{
PlugIn.ModelCore.Log.WriteLine("Agent Parameters NOT loading correctly.");
}
activeAgent.TimeToNextEpidemic = TimeToNext(activeAgent, Timestep) + activeAgent.StartYear;
//BDA-Climate
// if RandFunc == Climate, initial TimeToNextEpidemic = OutbreakLag - TimeSinceLastClimate
//BDA-Climate
int timeOfNext = PlugIn.ModelCore.CurrentTime + activeAgent.TimeToNextEpidemic - activeAgent.TimeSinceLastEpidemic;
if (timeOfNext < Timestep)
{
timeOfNext = Timestep;
}
if (timeOfNext < activeAgent.StartYear)
{
timeOfNext = activeAgent.StartYear;
}
SiteVars.TimeOfNext.ActiveSiteValues = timeOfNext;
int i = 0;
activeAgent.DispersalNeighbors
= GetDispersalNeighborhood(activeAgent, Timestep);
if (activeAgent.DispersalNeighbors != null)
{
foreach (RelativeLocation reloc in activeAgent.DispersalNeighbors)
{
i++;
}
PlugIn.ModelCore.Log.WriteLine("Dispersal Neighborhood = {0} neighbors.", i);
}
i = 0;
activeAgent.ResourceNeighbors = GetResourceNeighborhood(activeAgent);
if (activeAgent.ResourceNeighbors != null)
{
foreach (RelativeLocationWeighted reloc in activeAgent.ResourceNeighbors)
{
i++;
}
PlugIn.ModelCore.Log.WriteLine("Resource Neighborhood = {0} neighbors.", i);
}
}
string logFileName = parameters.LogFileName;
PlugIn.ModelCore.Log.WriteLine("Opening BDA log file \"{0}\" ...", logFileName);
log = PlugIn.ModelCore.CreateTextFile(logFileName);
log.AutoFlush = true;
log.Write("CurrentTime, ROS, AgentName, NumCohortsKilled, NumSitesDamaged, MeanSeverity");
log.WriteLine("");
}
//---------------------------------------------------------------------
/// <summary>
/// Initializes the extension with a data file.
/// </summary>
public override void Initialize()
{
Timestep = parameters.Timestep;
mapNameTemplate = parameters.MapNamesTemplate;
srdMapNames = parameters.SRDMapNames;
nrdMapNames = parameters.NRDMapNames;
vulnMapNames = parameters.BDPMapNames;
SiteVars.Initialize(modelCore);
manyAgentParameters = parameters.ManyAgentParameters;
foreach (IAgent activeAgent in manyAgentParameters)
{
int timeOfNext = 0;
if (activeAgent == null)
{
PlugIn.ModelCore.Log.WriteLine("Agent Parameters NOT loading correctly.");
}
if (activeAgent.RandFunc.ToString().ToLower() != "climate")
{
activeAgent.TimeToNextEpidemic = activeAgent.TimeToNext(Timestep) + activeAgent.StartYear;
//activeAgent.TimeToNextEpidemic = TimeToNext(activeAgent, Timestep) + activeAgent.StartYear;
//BDA-Climate
// if RandFunc == Climate, initial TimeToNextEpidemic = OutbreakLag - TimeSinceLastClimate
//BDA-Climate
//Amin BDA-Climate
timeOfNext = PlugIn.ModelCore.CurrentTime + activeAgent.TimeToNextEpidemic - activeAgent.TimeSinceLastEpidemic;
}
else if (activeAgent.RandFunc.ToString().ToLower() == "climate")
{
activeAgent.TimeToNextEpidemic = ((Agent_Climate)activeAgent).OutbreakLag - ((Agent_Climate)activeAgent).TimeSinceLastClimate;
timeOfNext = PlugIn.ModelCore.CurrentTime + activeAgent.TimeToNextEpidemic; //- activeAgent.TimeSinceLastEpidemic;
}
if (timeOfNext < Timestep)
{
timeOfNext = Timestep;
}
if (timeOfNext < activeAgent.StartYear)
{
timeOfNext = activeAgent.StartYear;
}
SiteVars.TimeOfNext.ActiveSiteValues = timeOfNext;
int i = 0;
activeAgent.DispersalNeighbors
= GetDispersalNeighborhood(activeAgent, Timestep);
if (activeAgent.DispersalNeighbors != null)
{
foreach (RelativeLocation reloc in activeAgent.DispersalNeighbors)
{
i++;
}
PlugIn.ModelCore.Log.WriteLine("Dispersal Neighborhood = {0} neighbors.", i);
}
i = 0;
activeAgent.ResourceNeighbors = GetResourceNeighborhood(activeAgent);
if (activeAgent.ResourceNeighbors != null)
{
foreach (RelativeLocationWeighted reloc in activeAgent.ResourceNeighbors)
{
i++;
}
PlugIn.ModelCore.Log.WriteLine("Resource Neighborhood = {0} neighbors.", i);
}
}
string logFileName = parameters.LogFileName;
PlugIn.ModelCore.Log.WriteLine("Opening BDA log file \"{0}\" ...", logFileName);
log = PlugIn.ModelCore.CreateTextFile(logFileName);
log.AutoFlush = true;
log.Write("CurrentTime, ROS, AgentName, NumCohortsKilled, NumSitesDamaged, MeanSeverity");
log.WriteLine("");
//AminBDA
//Console.WriteLine("\n\n -------------------------------------------\n\n");
//string in1 = Console.ReadLine();
//Console.WriteLine("\n\n -----------------Anual Climate-------------\n\n");
//Climate.GenerateClimate_GetPDSI(1893, 1897);
//if (Climate.AllData.Count > 1)
// Climate.GetPDSI(1893);
Landis.Library.Climate.Climate.GetPDSI(1980);
//Landis.Library.Climate.Climate.GetPDSI_Test();
//Landis.Library.Climate.Climate.Convert_USGS_to_ClimateData(Landis.Library.Climate.Period.Daily, "D:\\PSU\\Landis_II\\amin-branch\\USGS_Data\\GCM_data_4.4.13.csv\\GCM_data_4.4.13_ver2.csv");
//Landis.Library.Climate.Climate.Convert_USGS_to_ClimateData(Landis.Library.Climate.Period.Monthly, "D:\\PSU\\Landis_II\\amin-branch\\USGS_Data\\PRISM_data_AFRI_4.18.13.csv\\PRISM_data_AFRI_4.18.13.csv");
}
