public static SGEWorkManager GetSGEWorkManager(ILogger logger, IDirectoryLocation analysisFolder,
ISampleSettings settings, IsasConfiguration config)
{
LocalWorkManager local = GetLocalWorkManager(logger, analysisFolder, settings, config);
return new SGEWorkManager(logger, local,
config.ClusterQueueName, config.ClusterParallelEnvironmentName);
}
public static LocalWorkManager GetLocalWorkManager(ILogger logger, IDirectoryLocation analysisFolder,
ISampleSettings settings, IsasConfiguration config)
{
int maxThreadCount = settings.GetIntegerSetting(SampleSheetUtils.MaximumThreadCount, 0);
float maxMemGB = settings.GetFloatSetting(SampleSheetUtils.MaximumMemoryGB, config.MaximumMemoryGB);
var loggingFolder = IsasFilePaths.GetLoggingFolder(analysisFolder);
return new LocalWorkManager(logger, loggingFolder, maxThreadCount, maxMemGB, config.MaximumHoursPerProcess);
}
public static IWorkManager GetWorkManager(ILogger logger, IDirectoryLocation analysisFolder,
ISampleSettings settings, IsasConfiguration config)
{
bool useSGE = settings.GetBooleanSetting(SampleSheetUtils.UseSGE, config.UseCluster);
config.UseCluster = useSGE;
if (config.UseCluster)
{
return GetSGEWorkManager(logger, analysisFolder, settings, config);
}
else
{
return GetLocalWorkManager(logger, analysisFolder, settings, config);
}
}
/// <summary>
/// Gets the configuration object by providing a Dictionary of the config settings
/// </summary>
/// <param name="settings"></param>
/// <returns></returns>
public static IsasConfiguration GetConfiguration(Dictionary<string, string> settings)
{
lock (ConfigLock)
{
if (Config == null)
{
Config = new IsasConfiguration(settings);
}
}
return Config;
}
/// <summary>
/// Get the configuration by calling GetConfiguration
/// </summary>
public static IsasConfiguration GetConfiguration()
{
lock (ConfigLock)
{
if (Config == null)
{
Config = new IsasConfiguration();
}
}
return Config;
}
