public void Run(ILogger logger, ICheckpointRunner checkpointRunner, IWorkManager workManager) { CanvasRunner runner = new CanvasRunner(logger, workManager, checkpointRunner, false, CanvasCoverageMode.TruncatedDynamicRange, 100, CommonOptions.CustomParams); var callset = GetCallset(); logger.Info($"Normal Vcf path: {callset.NormalVcfPath}"); runner.CallSample(callset); }
public void Run(ILogger logger, ICheckpointRunner checkpointRunner, IWorkManager workManager) { CanvasRunner runner = new CanvasRunner(logger, workManager, checkpointRunner, true, CanvasCoverageMode.TruncatedDynamicRange, 300, CommonOptions.CustomParams); var callset = GetCallset(logger); runner.CallSample(callset); }
public void Run(ILogger logger, ICheckpointRunnerAsync checkpointRunner, IWorkManager workManager) { CanvasRunner runner = new CanvasRunner(logger, workManager, checkpointRunner, true, CanvasCoverageMode.GCContentWeighted, 100, CommonOptions.CustomParams); var callset = GetCallset(); runner.CallSample(callset); }