public cImageDisplayProperties GetImageDisplayProperties()
{
cImageDisplayProperties ToReturn = new cImageDisplayProperties();
ToReturn.ListMin = new List<double>();
ToReturn.ListMax = new List<double>();
ToReturn.ListActive = new List<bool>();
ToReturn.ListLUTNames = new List<string>();
ToReturn.ListGamma = new List<double>();
ToReturn.ListOpacity = new List<double>();
for (int IdxChannel = 0; IdxChannel < this.panelForLUTS.Controls.Count; IdxChannel++)
{
UserControlSingleLUT SingleLUT = (UserControlSingleLUT)this.panelForLUTS.Controls[IdxChannel];
ToReturn.ListMin.Add((double)SingleLUT.numericUpDownMinValue.Value);
ToReturn.ListMax.Add((double)SingleLUT.numericUpDownMaxValue.Value);
ToReturn.ListActive.Add(SingleLUT.checkBoxIsActive.Checked);
ToReturn.ListLUTNames.Add(SingleLUT.comboBoxForLUT.Text);
ToReturn.ListGamma.Add(SingleLUT.trackBarGamma.Value);
ToReturn.ListOpacity.Add(SingleLUT.trackBarOpacity.Value);
}
return ToReturn;
}
private void ToolStripMenuItem_Morpho_Erode(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageMorphoErode ME = new cImageMorphoErode();
ME.SetInputData(this.AssociatedImage);
ME.Iterations = 3;
ME.Run();
NewView.SetInputData(ME.GetOutPut());
NewView.Run();
cImageDisplayProperties TmpProp = new cImageDisplayProperties();
TmpProp.UpdateFromLUTManager(this.LUTManager);
NewView.MyImageViewer.IP.LUTManager.UpdateFromDisplayProperties(TmpProp);
}
public bool UpdateFromDisplayProperties(cImageDisplayProperties ImageDisplayProperties)
{
if (this.panelForLUTS.Controls.Count != ImageDisplayProperties.ListMin.Count)
{
return false;
}
for (int IdxChannel = 0; IdxChannel < this.panelForLUTS.Controls.Count; IdxChannel++)
{
UserControlSingleLUT SingleLUT = (UserControlSingleLUT)this.panelForLUTS.Controls[IdxChannel];
SingleLUT.UpdateFromDisplayProperties(ImageDisplayProperties, IdxChannel);
//SingleLUT.numericUpDownMinValue.Value = (decimal)ImageDisplayProperties.ListMin[IdxChannel];
//SingleLUT.numericUpDownMaxValue.Value = (decimal)ImageDisplayProperties.ListMax[IdxChannel];
//SingleLUT.checkBoxIsActive.Checked = ImageDisplayProperties.ListActive[IdxChannel];
//SingleLUT.comboBoxForLUT.Text = ImageDisplayProperties.ListLUT[IdxChannel];
}
return true;
}
private void ToolStripMenuItem_GeometricalFlip(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageGeometricFlip GF = new cImageGeometricFlip();
GF.SetInputData(this.AssociatedImage);
GF.ListProperties.FindByName("Horizontal").SetNewValue((bool)true);
GF.ListProperties.FindByName("Horizontal").IsGUIforValue = true;
cFeedBackMessage FeedBackMessage = GF.Run();
cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText(FeedBackMessage.GetFullFeedBack());
if (FeedBackMessage.IsSucceed == false) return;
cImageDisplayProperties TmpProp = new cImageDisplayProperties();
TmpProp.UpdateFromLUTManager(this.LUTManager);
NewView.SetInputData(GF.GetOutPut());
NewView.Run();
//NewView.LUTManager.UpdateFromDisplayProperties(TmpProp);
}
private void ToolStripMenuItem_GeometricalResize(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageGeometricResize GR = new cImageGeometricResize();
GR.SetInputData(this.AssociatedImage);
GR.SliceIndex = (int)ZNavigator.numericUpDownZPos.Value;
GR.InterpolationType = Emgu.CV.CvEnum.Inter.Linear;
GR.ListProperties.FindByName("Scale").SetNewValue((double)0.5);
GR.ListProperties.FindByName("Scale").IsGUIforValue = true;
GR.ListProperties.FindByName("Maximum Width").SetNewValue((int)0);
GR.ListProperties.FindByName("Maximum Width").IsGUIforValue = true;
cFeedBackMessage FeedBackMessage = GR.Run();
cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText(FeedBackMessage.GetFullFeedBack());
if (FeedBackMessage.IsSucceed == false) return;
cImageDisplayProperties TmpProp = new cImageDisplayProperties();
TmpProp.UpdateFromLUTManager(this.LUTManager);
NewView.SetInputData(GR.GetOutPut());
NewView.Run();
//NewView.LUTManager.UpdateFromDisplayProperties(TmpProp);
}
private void ToolStripMenuItem_Filtering_Median(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageFilterMedian FM = new cImageFilterMedian();
FM.SetInputData(this.AssociatedImage);
FM.ListProperties.FindByName("Kernel Size").SetNewValue((int)5);
FM.ListProperties.FindByName("Kernel Size").IsGUIforValue = true;
cFeedBackMessage FeedBackMessage = FM.Run();
//GlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText(FeedBackMessage.GetFullFeedBack());
if (FeedBackMessage.IsSucceed == false) return;
NewView.SetInputData(FM.GetOutPut());
NewView.Run();
cImageDisplayProperties TmpProp = new cImageDisplayProperties();
TmpProp.UpdateFromLUTManager(this.LUTManager);
NewView.MyImageViewer.IP.LUTManager.UpdateFromDisplayProperties(TmpProp);
//GlobalInfo.DisplayViewer(NewView);
}
private void ToolStripMenuItem_GeometricalCrop(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
Point Bottom = new Point(mRect.Left, mRect.Top);
Point ConvertedBottom = ConvertPanelCoordToImageCoord(Bottom);
Point Top = new Point(mRect.Right, mRect.Bottom);
Point ConvertedTop = ConvertPanelCoordToImageCoord(Top);
cImage CroppedImage = this.AssociatedImage.Crop(new cPoint3D(ConvertedBottom.X, ConvertedBottom.Y, 0), new cPoint3D(ConvertedTop.X, ConvertedTop.Y, 0));
cImageDisplayProperties TmpProp = new cImageDisplayProperties();
TmpProp.UpdateFromLUTManager(this.LUTManager);
NewView.SetInputData(CroppedImage);
NewView.Run();
NewView.MyImageViewer.IP.LUTManager.UpdateFromDisplayProperties(TmpProp);
}
private void ToolStripMenuItem_Filtering_GaussianConvolution(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
ImageAnalysisFiltering.cImageFilterGaussianConvolution GaussianBlur = new ImageAnalysisFiltering.cImageFilterGaussianConvolution();
GaussianBlur.SetInputData(this.AssociatedImage);
GaussianBlur.ListProperties.FindByName("Kernel Size").SetNewValue((int)3);
GaussianBlur.ListProperties.FindByName("Kernel Size").IsGUIforValue = true;
cFeedBackMessage FeedBackMessage = GaussianBlur.Run();
if (FeedBackMessage.IsSucceed == false) return;
NewView.SetInputData(GaussianBlur.GetOutPut());
NewView.Run();
cImageDisplayProperties TmpProp = new cImageDisplayProperties();
TmpProp.UpdateFromLUTManager(this.LUTManager);
NewView.MyImageViewer.IP.LUTManager.UpdateFromDisplayProperties(TmpProp);
}
private void ToolStripMenuItem_AddNoise(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageAddNoise AN = new cImageAddNoise();
AN.SetInputData(this.AssociatedImage);
AN.DistributionType = Classes.Base_Classes.Data.eRandDistributionType.GAUSSIAN;
AN.Mean = 0;
AN.Stdev = 10;
//FLM.DistanceType = Emgu.CV.CvEnum.DIST_TYPE.CV_DIST_L2;
AN.Run();
NewView.SetInputData(AN.GetOutPut());
NewView.Run();
cImageDisplayProperties TmpProp = new cImageDisplayProperties();
TmpProp.UpdateFromLUTManager(this.LUTManager);
NewView.MyImageViewer.IP.LUTManager.UpdateFromDisplayProperties(TmpProp);
}
cFeedBackMessage Process()
{
if (base.Start() == false)
{
base.FeedBackMessage.IsSucceed = false;
return base.FeedBackMessage;
}
object _firstValue = base.ListProperties.FindByName("Include Images?");
bool IsIncludeImages = false;
if (_firstValue == null)
{
base.GenerateError("-Include Images?- not found !");
return base.FeedBackMessage;
}
try
{
cProperty TmpProp = (cProperty)_firstValue;
IsIncludeImages = (bool)TmpProp.GetValue();
}
catch (Exception)
{
base.GenerateError("-Include Images?- cast didn't work");
return base.FeedBackMessage;
}
this.Output = this.Input.GetAverageDescriptorValuesFull();
if (IsIncludeImages)
{
this.Output.ListTags = new List<object>();
foreach (cWell item in Input)
{
cGetImageFromWells GIFW = new cGetImageFromWells();
GIFW.SetInputData(new cListWells(this));
if (!GIFW.Run().IsSucceed) continue;
cImage AccessedImage = GIFW.GetOutPut();
List<byte[][]> ListLUTs = new List<byte[][]>();
cLUT LUT = new cLUT();
ListLUTs.Add(LUT.LUT_LINEAR_RED);
ListLUTs.Add(LUT.LUT_LINEAR_GREEN);
ListLUTs.Add(LUT.LUT_LINEAR_BLUE);
List<double> ListMin = new List<double>();
ListMin.Add(200);
ListMin.Add(200);
List<double> ListMax = new List<double>();
ListMax.Add(65530);
ListMax.Add(5000);
cImageDisplayProperties IP = new cImageDisplayProperties();
IP.ListMax = ListMax;
IP.ListMin = ListMin;
this.Output.ListTags.Add(AccessedImage.GetBitmap(0.2f, IP, ListLUTs));
}
}
base.End();
return FeedBackMessage;
//// here is the core of the meta component ...
//// just a list of Component steps
//foreach (cWell item in Input)
//{
// item.AssociatedPlate.DBConnection = new cDBConnection(item.AssociatedPlate, item.SQLTableName);
// cListSingleBiologicalObjects ListPhenotypes = item.AssociatedPlate.DBConnection.GetBiologicalPhenotypes(item);
// cExtendedTable ET = item.AssociatedPlate.DBConnection.GetWellValues(item, cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptors());
// item.AssociatedPlate.DBConnection.CloseConnection();
// ET.ListTags = new List<object>();
// for (int i = 0; i < ET.Count; i++)
// {
// ET[i].ListTags = new List<object>();
// for (int j = 0; j < ListPhenotypes.Count; j++)
// ET[i].ListTags.Add(ListPhenotypes[j]);
// }
// for (int j = 0; j < ListPhenotypes.Count; j++)
// ET.ListTags.Add(ListPhenotypes[j]);
// if (Output == null)
// Output = new cExtendedTable(ET);
// else
// {
// cMerge M = new cMerge();
// M.IsHorizontal = false;
// M.SetInputData(Output, ET);
// M.Run();
// Output = M.GetOutPut();
// }
//}
}
/// <summary>
/// Build a BITMAP from a cImage
/// </summary>
/// <param name="ZoomFactor"></param>
/// <param name="ListMin">Minimum values for each band (if NULL then automatically computed)</param>
/// <param name="ListMax">Maximum values for each band (if NULL then automatically computed)</param>
/// <param name="ListLUTs">use cLUT ListLUT = new cLUT() to build your LUT</param>
/// <returns></returns>
public Bitmap GetBitmap(float ZoomFactor, cImageDisplayProperties ImageDisplayProperties, List<byte[][]> ListLUTs)
{
if ((this.Width == 0) || (this.Height == 0)) return null;
if (ListLUTs == null)
{
ListLUTs = new List<byte[][]>();
cLUT LUT = new cLUT();
if (this.GetNumChannels() == 1)
{
ListLUTs.Add(LUT.LUT_LINEAR);
}
else if (this.GetNumChannels() == 2)
{
ListLUTs.Add(LUT.LUT_LINEAR_RED);
ListLUTs.Add(LUT.LUT_LINEAR_GREEN);
}
else if (this.GetNumChannels() == 3)
{
ListLUTs.Add(LUT.LUT_LINEAR_RED);
ListLUTs.Add(LUT.LUT_LINEAR_GREEN);
ListLUTs.Add(LUT.LUT_LINEAR_BLUE);
}
else
{
ListLUTs.Add(LUT.LUT_LINEAR_RED);
ListLUTs.Add(LUT.LUT_LINEAR_GREEN);
ListLUTs.Add(LUT.LUT_LINEAR_BLUE);
for (int i = 0; i < this.GetNumChannels() - 3; i++)
{
ListLUTs.Add(LUT.LUT_LINEAR);
}
}
}
List<double> ListMax = new List<double>();
List<double> ListMin = new List<double>();
if (ImageDisplayProperties != null)
{
if (ImageDisplayProperties.ListMax == null)
{
for (int i = 0; i < this.GetNumChannels(); i++)
{
this.SingleChannelImage[i].UpDateMax();
ListMax.Add(this.SingleChannelImage[i].Max);
}
}
else
ListMax = ImageDisplayProperties.ListMax;
if (ImageDisplayProperties.ListMin == null)
{
for (int i = 0; i < this.GetNumChannels(); i++)
{
this.SingleChannelImage[i].UpDateMin();
ListMin.Add(this.SingleChannelImage[i].Min);
}
}
else
ListMin = ImageDisplayProperties.ListMin;
}
else
{
for (int i = 0; i < this.GetNumChannels(); i++)
{
this.SingleChannelImage[i].UpDateMax();
ListMax.Add(this.SingleChannelImage[i].Max);
}
for (int i = 0; i < this.GetNumChannels(); i++)
{
this.SingleChannelImage[i].UpDateMin();
ListMin.Add(this.SingleChannelImage[i].Min);
}
}
List<bool> ListActive = null;
if ((ImageDisplayProperties == null) || (ImageDisplayProperties.ListActive == null))
{
ListActive = new List<bool>();
for (int i = 0; i < this.GetNumChannels(); i++)
{
ListActive.Add(true);
}
}
else
ListActive = ImageDisplayProperties.ListActive;
int NewWidth = (int)(this.Width * ZoomFactor);
int NewHeight = (int)(this.Height * ZoomFactor);
Bitmap BMPToBeReturned = new Bitmap(NewWidth, NewHeight, System.Drawing.Imaging.PixelFormat.Format24bppRgb);
// Lock the bitmap's bits.
Rectangle rect = new Rectangle(0, 0, NewWidth, NewHeight);
System.Drawing.Imaging.BitmapData bmpData = BMPToBeReturned.LockBits(rect, System.Drawing.Imaging.ImageLockMode.ReadWrite, BMPToBeReturned.PixelFormat);
// Get the address of the first line.
IntPtr ptr = bmpData.Scan0;
int scanline = Math.Abs(bmpData.Stride);
int bytes = scanline * NewHeight;
byte[] rgbValues = new byte[bytes];
byte CurrentRed;
byte CurrentGreen;
byte CurrentBlue;
int RealX;
int RealY;
// Copy the RGB values into the array.
System.Runtime.InteropServices.Marshal.Copy(ptr, rgbValues, 0, bytes);
for (int IdxChannel = 0; IdxChannel < this.GetNumChannels(); IdxChannel++)
{
if (!ListActive[IdxChannel]) continue;
byte[][] CurrentLUT = ListLUTs[IdxChannel];
for (int FullY = 0; FullY < NewHeight; FullY++)
{
RealY = (int)(FullY / ZoomFactor);
if (RealY >= this.Height) RealY = this.Height - 1;
for (int FullX = 0; FullX < NewWidth; FullX++)
{
RealX = (int)(FullX / ZoomFactor);
if (RealX >= this.Width) RealX = this.Width - 1;
float Value = this.SingleChannelImage[IdxChannel].Data[RealX + RealY * this.Width];
int ConvertedValue = (int)((((CurrentLUT[0].Length - 1) * (Value - ListMin[IdxChannel]))
/ (ListMax[IdxChannel] - ListMin[IdxChannel])));
if (ConvertedValue < 0) ConvertedValue = 0;
if (ConvertedValue >= CurrentLUT[0].Length) ConvertedValue = CurrentLUT[0].Length - 1;
CurrentRed = (byte)CurrentLUT[0][ConvertedValue];
CurrentGreen = (byte)CurrentLUT[1][ConvertedValue];
CurrentBlue = (byte)CurrentLUT[2][ConvertedValue];
double NewValue = rgbValues[3 * FullX + FullY * scanline] + CurrentBlue;
if (NewValue > 255)
rgbValues[3 * FullX + FullY * scanline] = 255;
else
rgbValues[3 * FullX + FullY * scanline] += CurrentBlue;
NewValue = rgbValues[3 * FullX + 1 + FullY * scanline] + CurrentGreen;
if (NewValue > 255)
rgbValues[3 * FullX + 1 + FullY * scanline] = 255;
else
rgbValues[3 * FullX + 1 + FullY * scanline] += CurrentGreen;
NewValue = rgbValues[3 * FullX + 2 + FullY * scanline] + CurrentRed;
if (NewValue > 255)
rgbValues[3 * FullX + 2 + FullY * scanline] = 255;
else
rgbValues[3 * FullX + 2 + FullY * scanline] += CurrentRed;
}
}
}
// Copy the RGB values back to the bitmap
System.Runtime.InteropServices.Marshal.Copy(rgbValues, 0, ptr, bytes);
// Unlock the bits.
BMPToBeReturned.UnlockBits(bmpData);
return BMPToBeReturned;
}
public void UpdateFromDisplayProperties(cImageDisplayProperties ImageDisplayProperties, int IdxChannel)
{
// this.numericUpDownMaxValue.ValueChanged -= new EventHandler(numericUpDownMaxValue_ValueChanged);
this.numericUpDownMaxValue.Value = (decimal)ImageDisplayProperties.ListMax[IdxChannel];
// this.numericUpDownMaxValue.ValueChanged += new EventHandler(numericUpDownMaxValue_ValueChanged);
// this.comboBoxForLUT.SelectedIndexChanged -= new EventHandler(comboBoxForLUT_SelectedIndexChanged);
// this.comboBoxForLUT.SelectedIndexChanged += new EventHandler(comboBoxForLUT_SelectedIndexChanged);
// this.numericUpDownMinValue.ValueChanged -= new EventHandler(numericUpDownMinValue_ValueChanged);
this.numericUpDownMinValue.Value = (decimal)ImageDisplayProperties.ListMin[IdxChannel];
// this.numericUpDownMinValue.ValueChanged += new EventHandler(numericUpDownMinValue_ValueChanged);
// this.checkBoxIsActive.CheckedChanged -= new EventHandler(checkBoxIsActive_CheckedChanged);
this.checkBoxIsActive.Checked = ImageDisplayProperties.ListActive[IdxChannel];
// this.checkBoxIsActive.CheckedChanged += new EventHandler(checkBoxIsActive_CheckedChanged);
this.comboBoxForLUT.Text = ImageDisplayProperties.ListLUTNames[IdxChannel];
this.trackBarOpacity.Value = (int)ImageDisplayProperties.ListOpacity[IdxChannel];
this.trackBarGamma.Value = (int)ImageDisplayProperties.ListGamma[IdxChannel];
}