void ToolStripMenuItem_DRCAnalysis_Click(object sender, EventArgs e) { List<cDescriptorType> ListSelectedDesc = new List<cDescriptorType>();// GlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptors(); ListSelectedDesc.Add(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor()); //if (GlobalInfo == null) GlobalInfo = cGlobalInfo.CurrentScreening.GlobalInfo; //if (cGlobalInfo == null) return; cDesignerMultiChoices DT = new cDesignerMultiChoices(); cExtendedTable TableForGeneralResuts = new cExtendedTable(); TableForGeneralResuts.Add(new cExtendedList("p-Value")); TableForGeneralResuts.Add(new cExtendedList("EC50")); TableForGeneralResuts.Add(new cExtendedList("Slope")); TableForGeneralResuts.Add(new cExtendedList("Bottom")); TableForGeneralResuts.Add(new cExtendedList("Top")); TableForGeneralResuts.Add(new cExtendedList("Window")); TableForGeneralResuts.Add(new cExtendedList("Area Under Curve")); TableForGeneralResuts.ListRowNames = new List<string>(); TableForGeneralResuts.ListTags = new List<object>(); cDesignerSplitter MainSplitter = new cDesignerSplitter(); int IdxNode = 0; cListListWells CurrentSelectedGroups = this.BuildListListWells(); foreach (cListWells TmpListWells in CurrentSelectedGroups) { // List<cDescriptorType> LType = new List<cDescriptorType>(); // LType.Add(ListSelectedDesc[i]); cExtendedTable CompleteTable = TmpListWells.GetAverageDescriptorValues(ListSelectedDesc, true, false); //cExtendedTable CompleteTable = GLP.GetOutPut(); cCurveForGraph CFG = new cCurveForGraph(); CFG.SetInputData(CompleteTable); CFG.Run(); cSigmoidFitting SF = new cSigmoidFitting(); SF.SetInputData(CompleteTable); if (SF.Run().IsSucceed == false) continue; // double Ratio = LR.GetOutPut()[0][LR.GetOutPut().Count - 1] / SF.GetOutPut()[0][SF.GetOutPut().Count - 1]; cANOVA A = new cANOVA(); cExtendedTable NewTable = CFG.ListPtValues.Crop(0, CFG.ListPtValues.Count - 1, 1, CFG.ListPtValues[0].Count - 1); A.SignificanceThreshold = 1E-11; A.SetInputData(NewTable); A.Run(); cExtendedTable Sigmoid = SF.GetFittedRawValues(CFG.GetListXValues()); CompleteTable[0] = Sigmoid[1]; CompleteTable[0].Name = ListSelectedDesc[0].GetName() + "\n" + Sigmoid[1].Name; cDesignerSplitter DS = new cDesignerSplitter(); //cViewerTableAsRichText VT = new cViewerTableAsRichText(); cViewerTable VT = new cViewerTable(); cExtendedTable TableResults = SF.GetOutPut(); if ((A.GetOutPut() != null) && (A.GetOutPut().Count > 0)) { TableResults[0].Add(A.GetOutPut()[0][0]); TableResults[0].Add(A.GetOutPut()[0][1]); TableResults.ListRowNames.Add("p-Value"); TableResults.ListRowNames.Add("Rejected?"); TableForGeneralResuts[0].Add(A.GetOutPut()[0][0]); } else { TableForGeneralResuts[0].Add(1); } TableResults.Name = TV.Nodes[IdxNode].Text; TableResults[0].Name = "Fitting Parameters"; VT.SetInputData(TableResults); VT.DigitNumber = -1; VT.Run(); cViewerGraph1D VS1 = new cViewerGraph1D(); cExtendedTable MyTable = new cExtendedTable(Sigmoid[1]); MyTable.Name = TmpListWells.Name;// TV.Nodes[IdxNode].Text; VS1.SetInputData(MyTable); VS1.AddCurve(CFG); VS1.Chart.X_AxisValues = Sigmoid[0]; VS1.Chart.IsLogAxis = true; VS1.Chart.IsLine = true; VS1.Chart.IsShadow = false; VS1.Chart.Opacity = 210; VS1.Chart.LineWidth = 3; VS1.Chart.MarkerSize = 8; VS1.Chart.IsDisplayValues = cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxDRCDisplayValues.Checked; VS1.Chart.LabelAxisX = "Concentration"; VS1.Chart.LabelAxisY = CompleteTable[1].Name; VS1.Chart.XAxisFormatDigitNumber = cGlobalInfo.OptionsWindow.FFAllOptions.GetDRCNumberOfDigit(); VS1.Chart.IsZoomableX = true; Classes.Base_Classes.General.cLineVerticalForGraph VLForEC50 = new Classes.Base_Classes.General.cLineVerticalForGraph(SF.GetOutPut()[0][2]); //VLForEC50.AddText("EC50: " + SF.GetOutPut()[0][2].ToString("e3")/* + "\nError Ratio:" + Ratio.ToString("N4")*/); VS1.Chart.ListVerticalLines.Add(VLForEC50); TableForGeneralResuts.ListRowNames.Add(TV.Nodes[IdxNode].Text); TableForGeneralResuts.ListTags.Add((Chart)VS1.Chart);//ListSelectedDesc[0]); //EC50 TableForGeneralResuts[1].Add(SF.GetOutPut()[0][2]); // Slope TableForGeneralResuts[2].Add(SF.GetOutPut()[0][3]); // Bottom TableForGeneralResuts[3].Add(SF.GetOutPut()[0][0]); // Top TableForGeneralResuts[4].Add(SF.GetOutPut()[0][1]); // Window double Window = SF.GetOutPut()[0][1] / SF.GetOutPut()[0][0]; TableForGeneralResuts[5].Add(Window); TableForGeneralResuts[6].Add(SF.GetOutPut()[0][5]); VS1.Chart.ArraySeriesInfo = new cSerieInfoDesign[CompleteTable.Count]; for (int IdxCurve = 0; IdxCurve < CompleteTable.Count; IdxCurve++) { cSerieInfoDesign TmpSerieInfo = new cSerieInfoDesign(); TmpSerieInfo.color = cGlobalInfo.ListCellularPhenotypes[IdxCurve % cGlobalInfo.ListCellularPhenotypes.Count].ColourForDisplay; TmpSerieInfo.markerStyle = MarkerStyle.None; VS1.Chart.ArraySeriesInfo[IdxCurve] = TmpSerieInfo; } VS1.Run(); DS.SetInputData(VS1.GetOutPut()); DS.SetInputData(VT.GetOutPut()); DS.Orientation = Orientation.Horizontal; DS.Title = TV.Nodes[IdxNode++].Text; //TmpListWells.ti;// ListSelectedDesc[0].GetName(); DS.Run(); DT.SetInputData(DS.GetOutPut()); } DT.Run(); cExtendedControl TextEC = DT.GetOutPut(); if (TextEC == null) return; TextEC.Width = 0; TextEC.Height = 0; TextEC.Anchor = (System.Windows.Forms.AnchorStyles)(System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left | System.Windows.Forms.AnchorStyles.Right); MainSplitter.SetInputData(TextEC); string DRCsortingMethod = cGlobalInfo.OptionsWindow.FFAllOptions.comboBoxDRCSorting.SelectedItem.ToString(); //comboBoxDRCSorting int IdxColSorting = 0; cExtendedTable RT = TableForGeneralResuts; switch (DRCsortingMethod) { case "ANOVA": IdxColSorting = 0; break; case "EC50": IdxColSorting = 1; break; case "Window": IdxColSorting = 5; break; case "AUC": IdxColSorting = 6; break; case "None": IdxColSorting = -1; break; default: break; } if (IdxColSorting != -1) { cSort S = new cSort(); S.ColumnIndexForSorting = IdxColSorting; S.SetInputData(TableForGeneralResuts); S.IsAscending = true; S.Run(); RT = S.GetOutPut(); } cViewerTable VTForEC50 = new cViewerTable(); RT.Name = cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor().GetName(); VTForEC50.SetInputData(RT); VTForEC50.DigitNumber = -1; VTForEC50.Run(); MainSplitter.SetInputData(VTForEC50.GetOutPut()); MainSplitter.Orientation = Orientation.Vertical; MainSplitter.Run(); cDisplayToWindow DTW = new cDisplayToWindow(); DTW.SetInputData(MainSplitter.GetOutPut()); DTW.Title = "DRC analysis [" + cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor().GetName() + "]"; DTW.Run(); DTW.Display(); }
public cFeedBackMessage Run(bool IsDisplayResults) { cMachineLearning MachineLearning = new cMachineLearning(/*cWell.GlobalInfo*/null); ParamAlgoForClustering = MachineLearning.AskAndGetClusteringAlgo(); if (MinObjectsNumber == -1) MinObjectsNumber = (cGlobalInfo.CurrentScreening.Columns * cGlobalInfo.CurrentScreening.Rows * (int)cGlobalInfo.OptionsWindow.numericUpDownSystemMinWellRatio.Value) / 100; foreach (cPlate CurrentPlate in PlatesToProcess) { cExtendedTable CurrentPlateResult = null; foreach (var item in this.DescriptorsToProcess) { cExtendedTable ET = CurrentPlate.GetAverageValueList(item, false); ET.Name = item.GetName(); cExtendedTable ResultTable = this.GenerateArtifactMessage(ET, CurrentPlate); ResultTable.ListRowNames = new List<string>(); ResultTable.ListRowNames.Add(item.GetName()); if (CurrentPlateResult == null) CurrentPlateResult = new cExtendedTable(ResultTable); else { cMerge M = new cMerge(); M.IsHorizontal = false; M.SetInputData(CurrentPlateResult, ResultTable); M.Run(); CurrentPlateResult = M.GetOutPut(); } } CurrentPlateResult.Name = CurrentPlate.GetName(); CurrentPlateResult.Tag = CurrentPlate; this.Output.Add(CurrentPlateResult); } this.Output.Name = "Systematic Errors (" + PlatesToProcess.Count + " plate(s))"; if (IsDisplayResults) { cDisplayToWindow DTW = new cDisplayToWindow(); cDesignerMultiChoices DMC = new cDesignerMultiChoices(); foreach (var item in this.Output) { cDesignerSplitter DS = new cDesignerSplitter(); DS.Orientation = System.Windows.Forms.Orientation.Horizontal; DS.Title = item.Name; cViewerTable VT = new cViewerTable(); VT.SetInputData(item); VT.DigitNumber = 0; VT.Run(); DS.SetInputData(VT.GetOutPut()); cViewerHeatMap VHM = new cViewerHeatMap(); VHM.SetInputData(item); VHM.IsAutomatedMinMax = false; VHM.Min = 0; VHM.Max = 1; VHM.Run(); DS.SetInputData(VHM.GetOutPut()); DS.Run(); cExtendedControl TmpXCtrl = DS.GetOutPut(); TmpXCtrl.Tag = item.Tag; DMC.SetInputData(TmpXCtrl); } DMC.Run(); DTW.SetInputData(DMC.GetOutPut()); DTW.Title = "Systematic Errors [" + PlatesToProcess.Count + " plate(s)]"; DTW.Run(); DTW.Display(); //cDisplayListExtendedTable DLET = new cDisplayListExtendedTable(); //DLET.SetInputData(this.Output); //return DLET.Run(); } return FeedBackMessage; }