private void fillMatrix()
{
int alignLen = int.Parse(bandlengthBox.Text);
ResultTable.Result result;
PairWiseAlign processor = new PairWiseAlign(alignLen);
for (int x = 0; x < NUMBER_OF_SEQUENCES; ++x)
{
for (int y = x; y < NUMBER_OF_SEQUENCES; ++y)
{
// if the two sequences are the same, fill that cell with -3*length because they match
if (x == y)
{
result = new ResultTable.Result();
PairWiseAlign align = new PairWiseAlign();
int lengthOfSequenceA = Math.Min(m_sequences[x].Sequence.Length, align.getMaxhCharactersToAlign());
int score = -3 * lengthOfSequenceA;
string alignment = m_sequences[x].Sequence.Substring(0, lengthOfSequenceA);
result.Update(score, alignment, alignment);
}
else
{
result = processor.Align_And_Extract(m_sequences[x], m_sequences[y], bandCheckBox.Checked); // ********* hook to the student's code
}
m_resultTable.AddResult(x, y, result);
m_resultTable.DisplayResult(x, y);
}
}
}
private void alignStrings(int row, int col)
{
PairWiseAlign processor = new PairWiseAlign();
dpTable table = new dpTable(m_sequences[row], m_sequences[col]);
string[] alignments = table.Align();
alignBoxA.Text = alignments[0];
alignBoxB.Text = alignments[1];
}
private void fillMatrix()
{
PairWiseAlign processor = new PairWiseAlign();
for (int x = 0; x < NUMBER_OF_SEQUENCES; ++x)
{
for (int y = 0; y < NUMBER_OF_SEQUENCES; ++y)
{
m_resultTable.SetCell(x, y, processor.Align(m_sequences[x], m_sequences[y], m_resultTable, x, y));
}
}
}
private void fillMatrix()
{
processor = new PairWiseAlign();
for (int x = 0; x < NUMBER_OF_SEQUENCES; ++x)
{
for (int y = 0; y < NUMBER_OF_SEQUENCES; ++y)
{
m_resultTable.SetCell(x, y, processor.Align(m_sequences[x], m_sequences[y], m_resultTable, x, y));
}
}
}
private void fillMatrix()
{
PairWiseAlign processor = new PairWiseAlign();
for (int y = 0; y < m_sequences.Length; ++y)
{
for (int x = 0; x < m_sequences.Length; ++x)
{
m_resultTable.SetCell(x, y, processor.Align(m_sequences[x], m_sequences[y],m_resultTable,x,y));
//m_resultTable.SetCell(x, y, ("(" + x + ", " + y + ")"));
}
}
}
public MainForm()
{
InitializeComponent();
m_dbController = new DatabaseController();
m_dbController.EstablishConnection("../../db1.mdb");
statusMessage.Text = "Loading Database...";
// Set the number of Sequences to load below.
m_sequences = m_dbController.ReadGeneSequences(10);
m_resultTable = new ResultTable(this.dataGridViewResults, m_sequences.Length);
statusMessage.Text = "Loaded Database.";
processor = new PairWiseAlign();
}
public MainForm()
{
InitializeComponent();
m_dbController = new DatabaseController();
m_dbController.EstablishConnection("../../db1.mdb");
statusMessage.Text = "Loading Database...";
// Set the number of Sequences to load below.
m_sequences = m_dbController.ReadGeneSequences(10);
m_resultTable = new ResultTable(this.dataGridViewResults, m_sequences.Length);
statusMessage.Text = "Loaded Database.";
processor = new PairWiseAlign();
}
private void fillMatrix()
{
PairWiseAlign processor = new PairWiseAlign();
for (int y = 0; y < m_sequences.Length; ++y)
{
for (int x = 0; x < m_sequences.Length; ++x)
{
m_resultTable.SetCell(x, y, processor.Align(m_sequences[x], m_sequences[y], m_resultTable, x, y));
//m_resultTable.SetCell(x, y, ("(" + x + ", " + y + ")"));
}
}
}
private void fillMatrix()
{
int alignLen = int.Parse(bandlengthBox.Text);
ResultTable.Result result;
PairWiseAlign processor = new PairWiseAlign(alignLen);
for (int x = 0; x < NUMBER_OF_SEQUENCES; ++x)
{
for (int y = x; y < NUMBER_OF_SEQUENCES; ++y)
{
result = processor.Align_And_Extract(m_sequences[x], m_sequences[y], bandCheckBox.Checked); // ********* hook to the student's code
m_resultTable.AddResult(x, y, result);
m_resultTable.DisplayResult(x, y);
}
}
}
private void fillMatrix()
{
int alignLen = int.Parse(bandlengthBox.Text);
ResultTable.Result result;
PairWiseAlign processor = new PairWiseAlign(alignLen);
for (int x = 0; x < NUMBER_OF_SEQUENCES; ++x)
{
for (int y = x; y < NUMBER_OF_SEQUENCES; ++y)
{
result = processor.Align_And_Extract(new Tuple<int,int>(x,y),m_sequences[x], m_sequences[y], bandCheckBox.Checked); // ********* hook to the student's code
m_resultTable.AddResult(x,y,result);
m_resultTable.DisplayResult(x, y);
}
}
}
private void fillMatrix()
{
int alignLen = int.Parse(bandlengthBox.Text);
ResultTable.Result result;
PairWiseAlign processor = new PairWiseAlign(alignLen);
for (int x = 0; x < NUMBER_OF_SEQUENCES; ++x)
{
for (int y = x; y < NUMBER_OF_SEQUENCES; ++y)
{
// if the two sequences are the same, fill that cell with -3*length because they match
if (x == y)
{
result = new ResultTable.Result();
PairWiseAlign align = new PairWiseAlign();
int lengthOfSequenceA = Math.Min(m_sequences[x].Sequence.Length, align.getMaxhCharactersToAlign());
int score = -3 * lengthOfSequenceA;
string alignment = m_sequences[x].Sequence.Substring(0, lengthOfSequenceA);
result.Update(score, alignment, alignment);
}
else
{
result = processor.Align_And_Extract(m_sequences[x], m_sequences[y], bandCheckBox.Checked); // ********* hook to the student's code
}
m_resultTable.AddResult(x,y,result);
m_resultTable.DisplayResult(x, y);
}
}
}
private void dataGridViewResults_CellMouseClick(object sender, DataGridViewCellMouseEventArgs e)
{
PairWiseAlign processor = new PairWiseAlign();
alignmentTextBox.Lines = processor.Extract(m_sequences[e.RowIndex], m_sequences[e.ColumnIndex]);
}