public static Deconvolutor CreateDeconvolutor(DeconToolsParameters parameters)
{
Check.Require(parameters != null, "Factory cannot create Deconvolutor class. DeconToolsParameters are null.");
if (parameters == null)
{
return(new NullDeconvolutor());
}
Deconvolutor decon;
switch (parameters.ScanBasedWorkflowParameters.DeconvolutionType)
{
case Globals.DeconvolutionType.None:
return(new NullDeconvolutor());
case Globals.DeconvolutionType.ThrashV1:
// 2016 Port of ThrashV1 in DeconEngineV2 to C#, .NET 4
// This is the preferred deconvoluter as of Fall 2017
decon = new HornDeconvolutor(parameters);
return(decon);
case Globals.DeconvolutionType.ThrashV2:
// 2012 port of DeconEngine to C#
// As of 2016, not used because results do not agree with ThrashV1, C++
#pragma warning disable 618
decon = new InformedThrashDeconvolutor(parameters.ThrashParameters);
#pragma warning restore 618
return(decon);
case Globals.DeconvolutionType.Rapid:
// To include support for Rapid, you must add a reference to DeconEngine.dll, which was compiled with Visual Studio 2003 and uses MSVCP71.dll
// Note that DeconEngine.dll also depends on xerces-c_2_7.dll while DeconEngineV2.dll depends on xerces-c_2_8.dll
#if INCLUDE_RAPID
return(new RapidDeconvolutor(parameters.ThrashParameters.MinMSFeatureToBackgroundRatio,
Deconvolutor.DeconResultComboMode.simplyAddIt));
#else
throw new NotSupportedException("Support for Rapid is not included in this version of the DLL");
#endif
default:
throw new ArgumentOutOfRangeException(nameof(parameters),
"Trying to create the deconvolutor, but an incorrect Deconvolutor type was given. Good example: 'ThrashV1'");
}
}
public static Deconvolutor CreateDeconvolutor(DeconToolsParameters parameters)
{
Check.Require(parameters != null, "Factory cannot create Deconvolutor class. DeconToolsParameters are null.");
Deconvolutor decon;
switch (parameters.ScanBasedWorkflowParameters.DeconvolutionType)
{
case Globals.DeconvolutionType.None:
return(new NullDeconvolutor());
case Globals.DeconvolutionType.ThrashV1:
//#if Disable_DeconToolsV2
// throw new NotSupportedException(
// "Deconvolution method ThrashV1 is not supported since support for C++ based DeconToolsV2 is disabled; update the parameter file to use <DeconvolutionType>ThrashV2</DeconvolutionType>");
//#else
decon = new HornDeconvolutor(parameters);
return(decon);
//#endif
case Globals.DeconvolutionType.ThrashV2:
decon = new InformedThrashDeconvolutor(parameters.ThrashParameters);
return(decon);
case Globals.DeconvolutionType.Rapid:
// To include support for Rapid, you must add a reference to DeconEngine.dll, which was compiled with Visual Studio 2003 and uses MSVCP71.dll
// Note that DeconEngine.dll also depends on xerces-c_2_7.dll while DeconEngineV2.dll depends on xerces-c_2_8.dll
#if INCLUDE_RAPID
return(new RapidDeconvolutor(parameters.ThrashParameters.MinMSFeatureToBackgroundRatio,
Deconvolutor.DeconResultComboMode.simplyAddIt));
#else
throw new NotSupportedException("Support for Rapid is not included in this version of the DLL");
#endif
default:
throw new ArgumentOutOfRangeException("parameters",
"Trying to create the deconvolutor, but an incorrect Deconvolutor type was given. Good example: 'ThrashV1'");
}
}
