public override ParsingResult <IModeRunner> Parse(SuccessfulResultCollection parseInput)
{
CommonOptions commonOptions = parseInput.Get(CommonOptionsParser);
SomaticEnrichmentOptions somaticEnrichmentOptions = parseInput.Get(SomaticEnrichmentOptionsParser);
return(ParsingResult <IModeRunner> .SuccesfulResult(new SomaticEnrichmentRunner(commonOptions, somaticEnrichmentOptions)));
}
public override IParsingResult <SomaticEnrichmentInput> GetSerializedResult(SuccessfulResultCollection result, CommonOptions commonOptions)
{
SomaticEnrichmentOptions somaticEnrichmentOptions = result.Get(SomaticEnrichmentOptionsParser);
SingleSampleCommonOptions singleSampleCommonOptions = result.Get(SingleSampleCommonOptionsParser);
return(ParsingResult <SomaticEnrichmentInput> .SuccessfulResult(
new SomaticEnrichmentInput(commonOptions, somaticEnrichmentOptions, singleSampleCommonOptions)));
}
public SomaticEnrichmentInput(CommonOptions commonOptions, SomaticEnrichmentOptions somaticEnrichmentOptions, SingleSampleCommonOptions singleSampleCommonOptions)
{
CommonOptions = commonOptions;
SomaticEnrichmentOptions = somaticEnrichmentOptions;
SingleSampleCommonOptions = singleSampleCommonOptions;
}
