private static Dictionary <string, CuffdiffItem> ReadGeneDirectionMap(string file)
{
var items = (from line in File.ReadAllLines(file).Skip(1)
select CuffdiffItem.Parse(line)).ToList();
var result = items.ToDictionary(m => m.GeneId);
return(result);
}
public static CuffdiffItem Parse(string line)
{
var parts = line.Split('\t');
var result = new CuffdiffItem();
result.Line = line;
result.TestId = parts[0];
result.GeneId = parts[1];
result.Gene = parts[2];
result.Locus = parts[3];
result.Sample1 = parts[4];
result.Sample2 = parts[5];
result.Status = parts[6];
result.Value1 = ParseDouble(parts[7]);
result.Value2 = ParseDouble(parts[8]);
result.Log2FoldChange = ParseDouble(parts[9]);
result.TestStat = ParseDouble(parts[10]);
result.PValue = ParseDouble(parts[11]);
result.QValue = ParseDouble(parts[12]);
result.Significant = parts[13].Equals("yes");
return(result);
}
public static CuffdiffItem Parse(string line)
{
var parts = line.Split('\t');
var result = new CuffdiffItem();
result.Line = line;
result.TestId = parts[0];
result.GeneId = parts[1];
result.Gene = parts[2];
result.Locus = parts[3];
result.Sample1 = parts[4];
result.Sample2 = parts[5];
result.Status = parts[6];
result.Value1 = ParseDouble(parts[7]);
result.Value2 = ParseDouble(parts[8]);
result.Log2FoldChange = ParseDouble(parts[9]);
result.TestStat = ParseDouble(parts[10]);
result.PValue = ParseDouble(parts[11]);
result.QValue = ParseDouble(parts[12]);
result.Significant = parts[13].Equals("yes");
return result;
}
