public override IEnumerable <string> Process(string fileName)
{
var curResult = ChipSeqItemUtils.ReadItems(sourceFiles);
var curComp = new Dictionary <string, List <OverlappedChipSeqComparisonItem> >();
foreach (var res in curResult)
{
curComp[res.Key] = (from r in res.Value
select OverlappedChipSeqComparisonItem.Build(r, filenameGroup)).ToList();
}
foreach (var g in curComp.Values)
{
foreach (var r in g)
{
foreach (var item in r.ItemMap.Values)
{
item.CalculateFields();
item.InitializeDetails(filenameMap);
}
}
}
var olist = (from g in curComp.Values
from r in g
select r).ToList();
new OverlappedChipSeqComparisonItemFormat().WriteToFile(fileName, olist);
return(new string[] { fileName });
}
public static OverlappedChipSeqComparisonItem Build(OverlappedChipSeqItem item, Dictionary <string, string> fileNameGroup)
{
var result = new OverlappedChipSeqComparisonItem();
foreach (var csi in item)
{
var key = fileNameGroup[csi.Filename];
result.AddItem(key, csi);
}
return(result);
}
public static OverlappedChipSeqComparisonItem Build(OverlappedChipSeqItem item, Dictionary<string, string> fileNameGroup)
{
var result = new OverlappedChipSeqComparisonItem();
foreach (var csi in item)
{
var key = fileNameGroup[csi.Filename];
result.AddItem(key, csi);
}
return result;
}