public static ISessionFactory CreateSessionFactory()
{
var currentGuiVersion = Assembly.GetExecutingAssembly().GetName().Version.ToString(3);
var newdatabase = false;
var root = Path.Combine(Environment.GetFolderPath(Environment.SpecialFolder.ApplicationData),"Bumberdash");
if (!Directory.Exists(root))
Directory.CreateDirectory(root);
var dataFile = Path.Combine(root, "Bumbershoot " + currentGuiVersion + ".db");
var newfactory = CreateSessionFactory(dataFile, true);
var session = newfactory.OpenSession();
//check that all preloaded templates are present
if (session.QueryOver<ConfigFile>().List().Count<16)
{
//check for presence of completely empty database
if (session.QueryOver<HistoryItem>().List().Count == 0 &&
session.QueryOver<ConfigFile>().List().Count == 0)
newdatabase = true;
//load base database
var baseRoot = Path.GetDirectoryName(Process.GetCurrentProcess().MainModule.FileName);
if (baseRoot == null)
throw new Exception("Cannot find base database file");
if (!File.Exists(Path.Combine(baseRoot, "lib\\Bumbershoot.db")))
throw new Exception("Looking for \"" + Path.Combine(baseRoot, "lib\\Bumbershoot.db") + "\", however I cant find it");
var baseFactory = CreateSessionFactory(Path.Combine(baseRoot, "lib\\Bumbershoot.db"), false);
var baseSession = baseFactory.OpenSession();
//load base templates
var connectedBaseConfigs = baseSession.QueryOver<ConfigFile>().List();
var baseConfigs = new List<ConfigFile>();
foreach (var config in connectedBaseConfigs)
{
var newInstrument = new ConfigFile
{
Name = config.Name,
DestinationProgram = config.DestinationProgram,
FilePath = config.FilePath,
PropertyList = new List<ConfigProperty>()
};
foreach (var property in config.PropertyList)
{
var newProperty = new ConfigProperty
{
ConfigAssociation = newInstrument,
Name = property.Name,
Type = property.Type,
Value = property.Value
};
newInstrument.PropertyList.Add(newProperty);
}
baseConfigs.Add(newInstrument);
}
//delete old templates (if any remain) and load base template
foreach (var config in baseConfigs)
{
ConfigFile config1 = config;
var deleteList = session.QueryOver<ConfigFile>()
.Where(x => x.Name == config1.Name &&
x.DestinationProgram == config1.DestinationProgram)
.List();
foreach (var item in deleteList)
session.Delete(item);
session.Flush();
var newInstrument = new ConfigFile()
{
Name = config.Name,
DestinationProgram = config.DestinationProgram,
FilePath = config.FilePath
};
session.SaveOrUpdate(newInstrument);
session.Flush();
foreach (var property in config.PropertyList)
{
var newProperty = new ConfigProperty()
{
ConfigAssociation = newInstrument,
Name = property.Name,
Type = property.Type,
Value = property.Value
};
session.SaveOrUpdate(newProperty);
}
session.Flush();
}
//automatically try to recover old history items if database is flagged as new
if (newdatabase)
{
//if database structure is ever changed this will need to be updated to include conversion (probably in the form of basic sqlite queries)
var directoryInfo = new DirectoryInfo(root);
var bdFiles = directoryInfo.GetFiles("Bumbershoot*.db").Select(file => file.Name).ToList();
bdFiles.Sort();
if (bdFiles.Count > 1)
{
//reorder to proper location
if (bdFiles[bdFiles.Count - 1] == "Bumbershoot.db")
{
bdFiles.RemoveAt(bdFiles.Count - 1);
bdFiles.Insert(0, "Bumbershoot.db");
}
var restorePath = Path.Combine(root, bdFiles[bdFiles.Count - 2]);
var restoreFactory = CreateSessionFactory(restorePath, true);
var restoreSession = restoreFactory.OpenSession();
var restoreJobs = restoreSession.QueryOver<HistoryItem>().List<HistoryItem>();
var restoredConfigs = new Dictionary<int,ConfigFile>();
//start restoring jobs
foreach (var job in restoreJobs)
{
var newjob = new HistoryItem
{
Cpus = job.Cpus, CurrentStatus = job.CurrentStatus,
EndTime = job.EndTime, JobName = job.JobName,
JobType = job.JobType, OutputDirectory = job.OutputDirectory,
ProteinDatabase = job.ProteinDatabase, RowNumber = job.RowNumber,
SpectralLibrary = job.SpectralLibrary, StartTime = job.StartTime
};
if (!restoredConfigs.ContainsKey(job.InitialConfigFile.ConfigId))
{
var newConfig = new ConfigFile
{
DestinationProgram = job.InitialConfigFile.DestinationProgram,
FilePath = job.InitialConfigFile.FilePath,
FirstUsedDate = job.InitialConfigFile.FirstUsedDate,
Name = job.InitialConfigFile.Name
};
session.SaveOrUpdate(newConfig);
session.Flush();
foreach (var property in job.InitialConfigFile.PropertyList)
{
var newProperty = new ConfigProperty
{
Name = property.Name,
ConfigAssociation = newConfig,
Type = property.Type,
Value = property.Value
};
session.SaveOrUpdate(newProperty);
}
session.Flush();
newjob.InitialConfigFile = newConfig;
restoredConfigs.Add(job.InitialConfigFile.ConfigId, newConfig);
}
else
newjob.InitialConfigFile = restoredConfigs[job.InitialConfigFile.ConfigId];
if (job.TagConfigFile != null)
{
if (!restoredConfigs.ContainsKey(job.TagConfigFile.ConfigId))
{
var newConfig = new ConfigFile
{
DestinationProgram = job.TagConfigFile.DestinationProgram,
FilePath = job.TagConfigFile.FilePath,
FirstUsedDate = job.TagConfigFile.FirstUsedDate,
Name = job.TagConfigFile.Name
};
session.SaveOrUpdate(newConfig);
session.Flush();
foreach (var property in job.TagConfigFile.PropertyList)
{
var newProperty = new ConfigProperty
{
Name = property.Name,
ConfigAssociation = newConfig,
Type = property.Type,
Value = property.Value
};
session.SaveOrUpdate(newProperty);
}
session.Flush();
newjob.TagConfigFile = newConfig;
restoredConfigs.Add(job.TagConfigFile.ConfigId,newConfig);
}
else
newjob.TagConfigFile = restoredConfigs[job.TagConfigFile.ConfigId];
}
session.SaveOrUpdate(newjob);
session.Flush();
foreach (var file in job.FileList)
{
var newFile = new InputFile {FilePath = file.FilePath, HistoryItem = newjob};
session.SaveOrUpdate(newFile);
session.Flush();
}
}
}
}
}
session.Close();
return newfactory;
}
public static ISessionFactory CreateSessionFactory()
{
var currentGuiVersion = Assembly.GetExecutingAssembly().GetName().Version.ToString(3);
var newdatabase = false;
var root = Path.Combine(Environment.GetFolderPath(Environment.SpecialFolder.ApplicationData), "Bumberdash");
if (!Directory.Exists(root))
{
Directory.CreateDirectory(root);
}
var dataFile = Path.Combine(root, "Bumbershoot " + currentGuiVersion + ".db");
var newfactory = CreateSessionFactory(dataFile, true);
var session = newfactory.OpenSession();
//check that all preloaded templates are present
if (session.QueryOver <ConfigFile>().List().Count < 16)
{
//check for presence of completely empty database
if (session.QueryOver <HistoryItem>().List().Count == 0 &&
session.QueryOver <ConfigFile>().List().Count == 0)
{
newdatabase = true;
}
//load base database
var baseRoot = Path.GetDirectoryName(Process.GetCurrentProcess().MainModule.FileName);
if (baseRoot == null)
{
throw new Exception("Cannot find base database file");
}
if (!File.Exists(Path.Combine(baseRoot, "lib\\Bumbershoot.db")))
{
throw new Exception("Looking for \"" + Path.Combine(baseRoot, "lib\\Bumbershoot.db") + "\", however I cant find it");
}
var baseFactory = CreateSessionFactory(Path.Combine(baseRoot, "lib\\Bumbershoot.db"), false);
var baseSession = baseFactory.OpenSession();
//load base templates
var connectedBaseConfigs = baseSession.QueryOver <ConfigFile>().List();
var baseConfigs = new List <ConfigFile>();
foreach (var config in connectedBaseConfigs)
{
var newInstrument = new ConfigFile
{
Name = config.Name,
DestinationProgram = config.DestinationProgram,
FilePath = config.FilePath,
PropertyList = new List <ConfigProperty>()
};
foreach (var property in config.PropertyList)
{
var newProperty = new ConfigProperty
{
ConfigAssociation = newInstrument,
Name = property.Name,
Type = property.Type,
Value = property.Value
};
newInstrument.PropertyList.Add(newProperty);
}
baseConfigs.Add(newInstrument);
}
//delete old templates (if any remain) and load base template
foreach (var config in baseConfigs)
{
ConfigFile config1 = config;
var deleteList = session.QueryOver <ConfigFile>()
.Where(x => x.Name == config1.Name &&
x.DestinationProgram == config1.DestinationProgram)
.List();
foreach (var item in deleteList)
{
session.Delete(item);
}
session.Flush();
var newInstrument = new ConfigFile()
{
Name = config.Name,
DestinationProgram = config.DestinationProgram,
FilePath = config.FilePath
};
session.SaveOrUpdate(newInstrument);
session.Flush();
foreach (var property in config.PropertyList)
{
var newProperty = new ConfigProperty()
{
ConfigAssociation = newInstrument,
Name = property.Name,
Type = property.Type,
Value = property.Value
};
session.SaveOrUpdate(newProperty);
}
session.Flush();
}
//automatically try to recover old history items if database is flagged as new
if (newdatabase)
{
//if database structure is ever changed this will need to be updated to include conversion (probably in the form of basic sqlite queries)
var directoryInfo = new DirectoryInfo(root);
var bdFiles = directoryInfo.GetFiles("Bumbershoot*.db").Select(file => file.Name).ToList();
bdFiles.Sort();
if (bdFiles.Count > 1)
{
//reorder to proper location
if (bdFiles[bdFiles.Count - 1] == "Bumbershoot.db")
{
bdFiles.RemoveAt(bdFiles.Count - 1);
bdFiles.Insert(0, "Bumbershoot.db");
}
var restorePath = Path.Combine(root, bdFiles[bdFiles.Count - 2]);
var restoreFactory = CreateSessionFactory(restorePath, true);
var restoreSession = restoreFactory.OpenSession();
var restoreJobs = restoreSession.QueryOver <HistoryItem>().List <HistoryItem>();
var restoredConfigs = new Dictionary <int, ConfigFile>();
//start restoring jobs
foreach (var job in restoreJobs)
{
var newjob = new HistoryItem
{
Cpus = job.Cpus, CurrentStatus = job.CurrentStatus,
EndTime = job.EndTime, JobName = job.JobName,
JobType = job.JobType, OutputDirectory = job.OutputDirectory,
ProteinDatabase = job.ProteinDatabase, RowNumber = job.RowNumber,
SpectralLibrary = job.SpectralLibrary, StartTime = job.StartTime
};
if (!restoredConfigs.ContainsKey(job.InitialConfigFile.ConfigId))
{
var newConfig = new ConfigFile
{
DestinationProgram = job.InitialConfigFile.DestinationProgram,
FilePath = job.InitialConfigFile.FilePath,
FirstUsedDate = job.InitialConfigFile.FirstUsedDate,
Name = job.InitialConfigFile.Name
};
session.SaveOrUpdate(newConfig);
session.Flush();
foreach (var property in job.InitialConfigFile.PropertyList)
{
var newProperty = new ConfigProperty
{
Name = property.Name,
ConfigAssociation = newConfig,
Type = property.Type,
Value = property.Value
};
session.SaveOrUpdate(newProperty);
}
session.Flush();
newjob.InitialConfigFile = newConfig;
restoredConfigs.Add(job.InitialConfigFile.ConfigId, newConfig);
}
else
{
newjob.InitialConfigFile = restoredConfigs[job.InitialConfigFile.ConfigId];
}
if (job.TagConfigFile != null)
{
if (!restoredConfigs.ContainsKey(job.TagConfigFile.ConfigId))
{
var newConfig = new ConfigFile
{
DestinationProgram = job.TagConfigFile.DestinationProgram,
FilePath = job.TagConfigFile.FilePath,
FirstUsedDate = job.TagConfigFile.FirstUsedDate,
Name = job.TagConfigFile.Name
};
session.SaveOrUpdate(newConfig);
session.Flush();
foreach (var property in job.TagConfigFile.PropertyList)
{
var newProperty = new ConfigProperty
{
Name = property.Name,
ConfigAssociation = newConfig,
Type = property.Type,
Value = property.Value
};
session.SaveOrUpdate(newProperty);
}
session.Flush();
newjob.TagConfigFile = newConfig;
restoredConfigs.Add(job.TagConfigFile.ConfigId, newConfig);
}
else
{
newjob.TagConfigFile = restoredConfigs[job.TagConfigFile.ConfigId];
}
}
session.SaveOrUpdate(newjob);
session.Flush();
foreach (var file in job.FileList)
{
var newFile = new InputFile {
FilePath = file.FilePath, HistoryItem = newjob
};
session.SaveOrUpdate(newFile);
session.Flush();
}
}
}
}
}
session.Close();
return(newfactory);
}
