/// <summary>
/// Parses the sequences from the given filename.
/// </summary>
/// <param name="parser">Sequence Parser</param>
/// <param name="fileName">Filename to open/close</param>
/// <returns>Set of parsed sequences.</returns>
public static WiggleAnnotation ParseOne(this WiggleParser parser, string fileName)
{
using (FileStream fs = File.OpenRead(fileName))
{
return(parser.ParseOne(fs));
}
}
/// <summary>
/// Parses the sequences from the given filename.
/// </summary>
/// <param name="parser">Sequence Parser</param>
/// <param name="fileName">Filename to open/close</param>
/// <returns>Set of parsed sequences.</returns>
public static IEnumerable <WiggleAnnotation> Parse(this WiggleParser parser, string fileName)
{
using (FileStream fs = File.OpenRead(fileName))
{
foreach (var item in parser.Parse(fs))
{
yield return(item);
}
}
}
/// <summary>
/// Parses the sequences from the open file.
/// </summary>
/// <param name="parser">Sequence Parser</param>
/// <returns>Set of parsed sequences.</returns>
public static IEnumerable <WiggleAnnotation> Parse(this WiggleParser parser)
{
var fs = ParserFormatterExtensions <WiggleParser> .GetOpenStream(parser, false);
if (fs != null)
{
foreach (var item in parser.Parse(fs))
{
yield return(item);
}
}
}
/// <summary>
/// Closes the parser.
/// </summary>
/// <param name="parser">Parser</param>
public static void Close(this WiggleParser parser)
{
ParserFormatterExtensions <WiggleParser> .Close(parser);
}
/// <summary>
/// Opens a sequence file using the parser.
/// </summary>
/// <param name="parser">Parser</param>
/// <param name="filename">File to open</param>
/// <returns>Disposable object to close the stream.</returns>
public static IDisposable Open(this WiggleParser parser, string filename)
{
return(ParserFormatterExtensions <WiggleParser> .Open(parser, filename));
}