/// <summary> /// Refines layout of alignment between reads and reference genome by taking care of indels and rearrangements. /// </summary> /// <param name="deltaAlignmentCollection">Ordered Repeat Resolved Deltas.</param> private static IEnumerable <DeltaAlignment> LayoutRefinment(DeltaAlignmentCollection deltaAlignmentCollection) { return(LayoutRefiner.RefineLayout(deltaAlignmentCollection)); }
/// <summary> /// Refines layout of alignment between reads and reference genome by taking care of indels and rearrangements. /// </summary> /// <param name="orderedRepeatResolvedDeltas">Ordered Repeat Resolved Deltas.</param> private void LayoutRefinment(IList <DeltaAlignment> orderedRepeatResolvedDeltas) { LayoutRefiner.RefineLayout(orderedRepeatResolvedDeltas); }